Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4774 |
Symbol | |
ID | 6483077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 4648058 |
End bp | 4649791 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642739988 |
Product | outer membrane protein OMP85 family |
Protein accession | YP_002043666 |
Protein GI | 194442430 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0729] Outer membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 95 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCCACATA TCCGTCAGTT ATGTTGGGTT AGCTTACTGT GCCTGAGCAG TTCTGCGGTA GCCGCAAATG TTCGTCTGAA AGTCGAAGGG CTATCCGGAG AGCTGGAAAA AAACGTTCGC GCACAGCTCT CTACGATTCA GAGCGATGAG GTGACGCCGG ATCGGCGCTT TCGCGCCCGA GTTGATGATG CGATTCGCGA AGGGCTTAAA GCGTTAGGCT ATTACGAACC CACTATCAAA TTCGACTTGC TTCCACCGCC TGCGAAAGGA CGGCAGGTAT TAATCGCCAG GGTTACGCCC GGCCAGCCGG TGTTGATTGG CGGTACAGAA GTCATTTTAC GCGGCGGCGC GCGTACGGAC AAAGATTATC TGGCCTTACT GAAAACGCGT CCGGCAATCG GCACGGTGCT CAACCAGGGG GACTATGACA ATTTTAAAAA GTCGTTAACC AGCGTGTCGC TACGCAAAGG CTATTTCGAC AGCGAATTCA TTAAAAGTCA GTTGGGAATT GCTCTGGGCC GTCATCAGGC GTTTTGGGAT ATTGATTATG ATAGCGGTGA GCGCTATCGC TTCGGGCCTG TCACCTTCGA AGGTTCGCAG ATTCGTGATG AATATTTACA AAATCTGTTG CCGTTTAAAG AGGGTGATGA GTACGAATCG AAAGATTTGG CGGAACTAAA CCGCCGACTT TCCGCTACCG GATGGTTTAA TTCTGTCGTG GTGGCGCCGG AATTTGAGAA ATCGCGTAAA ACAAAAATTC TGCCGTTAAA AGGCGTGGTA TCGCCGCGAA CCGAAAACAC GATTGAAACC GGGGTGGGGT ACTCCACCGA CGTCGGGCCG CGCGTGAAAG CGTCGTGGAA AAAACCGTGG ATGAACTCTT ACGGTCATAG CCTGACCACC AGCACCAGTA TTTCTGCGCC GGAACAGGTG CTGGATTTTA GTTATAAAAT GCCGCTGCTG AAAAACCCGC TGGAGCAATA CTATCTGGTC CAGGGCGGTT TTAAACGTAC CGATTTGAAT GATACGGAGC AGGACTCGAC CACGCTTGCC GTGTCGCGTT ACTGGGACCT TTCCAGCGGT TGGCAGCGGG CGATTAACCT GCGCTGGAGT TTCGACCACT TTACCCAGGG GAACGTCACC AACACCACCA TGCTGTTCTA CCCGGGCGTG ATGATCAGTC GAACCCGCTC GCGAGGGGGG CTGATGCCAA CCTGGGGCGA TTCGCAGCGC TACTCGGTAG ACTATTCGAA TACGGCCTGG GGCTCCGACG TGGATTTCTC CGTGCTGCAG GCGCAAAACG TCTGGATTCG GACTTTGTAC GATCGCCACC GTTTTGTGAT GCGCGCCAAT TTGGGCTGGA TAGAAACCGG TGATTTCGAC AAAGTTCCGC CGGATTTACG TTTCTTCGCC GGGGGCGACC GCAGTATTCG CGGCTATAAA TACAAATCTA TTTCGCCTAA AGATAGCGAC GGCAATCTTA AAGGCGCCTC AAAACTGGCA ACCGGATCGC TGGAGTACCA GTATAACGTC ACCGGCAAAT GGTGGGGGGC AGTGTTTGTC GATAGCGGCG AGGCGGTGAG TGATATTCGC CGTAGCGATT TCAAAACCGG GACCGGGGTC GGCGTGCGCT GGGCGTCGCC GGTTGGGCCT ATCAAACTCG ATTTTGCCGT ACCGGTCGGC GACAAAGACG AACACGGTTT ACAGTTTTAT ATCGGTCTGG GGCCTGAATT ATGA
|
Protein sequence | MPHIRQLCWV SLLCLSSSAV AANVRLKVEG LSGELEKNVR AQLSTIQSDE VTPDRRFRAR VDDAIREGLK ALGYYEPTIK FDLLPPPAKG RQVLIARVTP GQPVLIGGTE VILRGGARTD KDYLALLKTR PAIGTVLNQG DYDNFKKSLT SVSLRKGYFD SEFIKSQLGI ALGRHQAFWD IDYDSGERYR FGPVTFEGSQ IRDEYLQNLL PFKEGDEYES KDLAELNRRL SATGWFNSVV VAPEFEKSRK TKILPLKGVV SPRTENTIET GVGYSTDVGP RVKASWKKPW MNSYGHSLTT STSISAPEQV LDFSYKMPLL KNPLEQYYLV QGGFKRTDLN DTEQDSTTLA VSRYWDLSSG WQRAINLRWS FDHFTQGNVT NTTMLFYPGV MISRTRSRGG LMPTWGDSQR YSVDYSNTAW GSDVDFSVLQ AQNVWIRTLY DRHRFVMRAN LGWIETGDFD KVPPDLRFFA GGDRSIRGYK YKSISPKDSD GNLKGASKLA TGSLEYQYNV TGKWWGAVFV DSGEAVSDIR RSDFKTGTGV GVRWASPVGP IKLDFAVPVG DKDEHGLQFY IGLGPEL
|
| |