Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4766 |
Symbol | cpdB |
ID | 6484088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 4641565 |
End bp | 4643508 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642739980 |
Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
Protein accession | YP_002043658 |
Protein GI | 194446288 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.675138 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 95 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAGT TTAGTGCAAC GCTTCTGGCT ACGCTGATCG CCGCCAGCGT GAATGCGGCC ACCGTCGATC TCCGTATCAT GGAAACTACT GATTTACATA GCAACATGAT GGATTTCGAT TATTACAAGG ATACCGCAAC CGAAAAATTC GGATTGGTAC GTACCGCAAG TTTGATTCAT GCCGCCCGAA ATGAAGTCAA AAACAGCGTG CTGGTGGATA ACGGCGACCT GATTCAGGGG AGCCCTCTGG GCGATTATAT GGCGGCAAAA GGGCTCAAAG ACGGTGATGT TCACCCGGTC TATAAAGCGC TCAACACTCT GGATTACGCG GTTGGAAACC TCGGCAACCA TGAGTTTAAT TATGGTCTGG ACTATCTGCA TAACGCGCTG GCCGGCGCGA AATTCCCTTA TGTTAACGCC AATATTATCG ACGTTAAAAC CCAAAAGCCG CTCTTTACGC CTTATCTGAT TAAAGAGACG AGCGTTATTG ATAAAGACGG CAACCCGCAA ACTCTGAAAA TCGGCTATAT CGGCTTTGTT CCGCCGCAAA TCATGATTTG GGATAAAGCG AATCTGAGCG GCAAAGTTAC CGTCAATGAC ATTACGGAAA CCGCCCGGAA ATATGTGCCC GAAATGCGCG AGAAAGGCGC TGATATCGTG GTAGTCATTG CTCACTCAGG CCTTTCTGCC GATCCGTACC ACAGCATGGC GGAAAACTCG GTTTATTACC TCAGCGAAGT TCCCGGCGTC GACGCGATTA TGTTTGGCCA CGCTCATGCC GTCTTCCCCG GTAAAGATTT TGCCGACATC AAAGGCGCGG ATATCGCCAA AGGTACACTT AACGGCATTC CTGCGGTAAT GCCTGGCATG TGGGGCGACC ATCTGGGAGT GGTCGATCTG GTGCTCAACA ACGACAACGG CAAATGGCAG GTTACGCAGG CGAAAGCGGA AGCGCGGCCT ATTTACGACG CCGCCGCTAA AAAGTCGCTG GCGGCGGAAG ACAGTAAGCT GGTCGGTATT CTGAAAGCCG ATCACGATGC CACCCGCGAG TTTGTCAGCA AGCCCATCGG TAAATCCGCC GATAACATGT ACAGTTATCT TGCTCTGGTG CAGGACGATC CTACCGTACA GGTGGTGAAT AACGCGCAAA AAGTGTATGT GGAACACTTT ATTCAGGGCG ATCCGGATCT GGCGAAACTG CCGGTGCTGT CCGCCGCCGC GCCGTTTAAA GTTGGCGGGC GTAAGAACGA TCCTGCCAGC TTTGTCGAGG TGGAAAAAGG CCAGTTGACC TTCCGTAACG CCGCCGATCT TTATCTCTAT CCGAATACGC TGGTGGTGGT GAAAGCCAGC GGCAAAGAGG TAAAAGAGTG GCTGGAATGT TCTGCCGGAC AGTTTAATCA GATTGATATT CACAGCAACA AACCGCAATC GTTGATCAAT TGGGATGGCT TTCGCACCTA TAATTTCGAT GTCATTGACG GCGTGAATTA TCAAATCGAT GTGTCACAGC CCGCCCGCTA TGATGGCGAA TGCCAGATGG TGAATCCACA GGCGGAACGT ATTAAAAACC TGACCTTTAA CGGTAAGCCT GTCGACCCGA ACGCTACGTT CCTGGTCGCC ACGAATAACT ATCGCGCTTA CGGCGGCAAG TTTGCCGGCA CGGGCGACAG CCATATCGCC TTTGCGTCTC CGGATGAAAA TCGCGCCGTG CTGGCGGCAT GGATTGGCGC AGAGTCAAAA CGCGCGGGCG AAATCCATCC GGCGGCGGAT AATAACTGGC GTCTGGCGCC AATCCACAGC GATACGACGC TGGATATCCG CTTTGAAACA TCGCCAGGCG ATAAAGCCGC GACCTTCATT AAAGAGAAAG GGCAGTATCC GATGAAGAAG GTTGCCGTCG ATGATATCGG TTTTGCCATT TATCAGGTGG ATTTGAGCAA GTAA
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Protein sequence | MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIH AARNEVKNSV LVDNGDLIQG SPLGDYMAAK GLKDGDVHPV YKALNTLDYA VGNLGNHEFN YGLDYLHNAL AGAKFPYVNA NIIDVKTQKP LFTPYLIKET SVIDKDGNPQ TLKIGYIGFV PPQIMIWDKA NLSGKVTVND ITETARKYVP EMREKGADIV VVIAHSGLSA DPYHSMAENS VYYLSEVPGV DAIMFGHAHA VFPGKDFADI KGADIAKGTL NGIPAVMPGM WGDHLGVVDL VLNNDNGKWQ VTQAKAEARP IYDAAAKKSL AAEDSKLVGI LKADHDATRE FVSKPIGKSA DNMYSYLALV QDDPTVQVVN NAQKVYVEHF IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS FVEVEKGQLT FRNAADLYLY PNTLVVVKAS GKEVKEWLEC SAGQFNQIDI HSNKPQSLIN WDGFRTYNFD VIDGVNYQID VSQPARYDGE CQMVNPQAER IKNLTFNGKP VDPNATFLVA TNNYRAYGGK FAGTGDSHIA FASPDENRAV LAAWIGAESK RAGEIHPAAD NNWRLAPIHS DTTLDIRFET SPGDKAATFI KEKGQYPMKK VAVDDIGFAI YQVDLSK
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