| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4650 |
|---|
| Symbol | |
|---|
| ID | 6484140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 4540994 |
|---|
| End bp | 4542625 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642739872 |
|---|
| Product | sensory histidine kinase DcuS |
|---|
| Protein accession | YP_002043554 |
|---|
| Protein GI | 194444527 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.414572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.461897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACT CCCTGCCATG CCGGGCGTTA CGCAAACGCC CCATGAAACT CGGCACTACC
GTCATTCTGA TGGTCAGCGC CGTTTTGTTT TCGGTGCTCG TTGTGGTCCA TCTGATCTAT
TTTTCGCAAA TCAGCAGCAT GACGCGCGAC GCGCTGGCAG ATAAAGCGCT GGCGGTGGCT
CGCTCGCTGG CGGACTCTCC GGCAATTCGC GAGGGGCTGA AAAAACCGCC TGCGGAAAGC
GGCATTCAGC CCCTCGCCGA AGCGGTGAGC CAGCATAATG GCTTTTTGTT TATTGTGGTG
ACCAATATGC AGGGCATCCG TTATTCGCAC CCAGAAACGC AGCGAATCGG CCAACCGTTC
AAAGGCGATG ACATTCTGCT CGCGCTGCAG GGAAAGGAAA ACGTTGCCAT TAATCGCGGC
TTTCTTGCCA AAGCGCTGCG CGTTTTCACA CCGGTTTATG ATGAACACCA CCGGCAGATC
GGCGTGGTAG CGATTGGCCT GGAACTCAGT CACGTTACGC AGCAGATCAA CAATAGCCGC
GGCAGTATTA TCTGGTCCAT TCTGTTCGGC GCTCTGGTGG GGTTATTAGG CACGTATGCG
CTGGTCAAGG TGCTGAAACG TATCCTGTTT GGCCTCGAAC CCTATGAGAT CTCAACCCTG
TTTGAACAAC GCCAGGCAAT GCTGCAGTCA ATCAAAGAGG GCGTAATCGC CGTAGATGAT
AGCGGCGAAG TCACGTTGAT TAACCATGCG GCGCAGGCGC TGCTCGATTA TCGAAAAACG
CAGGATGACG CCAGATTATC CACCCTGAGT CATGCCTGGT CGCAGGTGGT GGACATTAGC
GAAGTGTTGC GTGACGGTAC GCCGCGCCGC GATGAAGAGA TCATCGTCAA AGGCCGCCTG
CTGCTGGTGA ATACCGTTCC GGTGCGCAGC AACGGCGAAA TTATCGGCGC GATATCCACC
TTCAGGGATA AAACAGAAGT TCGCCAACTG ATGCAGCGGT TGGACGGGAT GGTGAACTAC
GCGGATGCGC TCCGTGAACG ATCCCACGAA TTCATGAACA AATTACATGT GATTCTGGGA
TTATTGCACC TGAAGAGTTA TAAGCAGCTT GAAGCGTATA TTATCAAGAC GGCCAATAAC
TATCAGGAAG AGATCGGTTT GCTGCTGGGT AAAATAAAGT CGCCGATTAT CGCTGGCTTT
TTGCTCAGTA AGATTACTCG CGCCTCTGAT TTCGGGCACA GCCTGGTGAT AAGCAGCGAC
AGCCAGTTAC CGGATAATAA CAATGAAGAT CAGGTTACGG TGCTGATTAC GGCGCTGGGT
AATTTGATTG AAAACGCGCT GGAAGCATTG AGCCAGGAAT CCGGCGGCGA AATCAGCGTC
TCGTTACACT ACCGTCATGG CTGGCTGCAT TGCGAAGTGA GCGATGACGG TCCGGGTATC
GAACCTGAGC GCATCGAGGC GATTTTTGAA AAAGGCGTCT CGTCGAAAGG CGCCGAACGC
GGCGTCGGTT TAGCGCTGGT TAAACAGCAG GTTGAAGCGC TTGGCGGCGT AATTTCCGTG
GAGTCCGAGC CTGGGATCTT CACACAATTT TTTGTACAGT TACCCTGGGA TGGAAAAAGG
ACCAGCCTAT GA
|
|---|
| Protein sequence | MKHSLPCRAL RKRPMKLGTT VILMVSAVLF SVLVVVHLIY FSQISSMTRD ALADKALAVA
RSLADSPAIR EGLKKPPAES GIQPLAEAVS QHNGFLFIVV TNMQGIRYSH PETQRIGQPF
KGDDILLALQ GKENVAINRG FLAKALRVFT PVYDEHHRQI GVVAIGLELS HVTQQINNSR
GSIIWSILFG ALVGLLGTYA LVKVLKRILF GLEPYEISTL FEQRQAMLQS IKEGVIAVDD
SGEVTLINHA AQALLDYRKT QDDARLSTLS HAWSQVVDIS EVLRDGTPRR DEEIIVKGRL
LLVNTVPVRS NGEIIGAIST FRDKTEVRQL MQRLDGMVNY ADALRERSHE FMNKLHVILG
LLHLKSYKQL EAYIIKTANN YQEEIGLLLG KIKSPIIAGF LLSKITRASD FGHSLVISSD
SQLPDNNNED QVTVLITALG NLIENALEAL SQESGGEISV SLHYRHGWLH CEVSDDGPGI
EPERIEAIFE KGVSSKGAER GVGLALVKQQ VEALGGVISV ESEPGIFTQF FVQLPWDGKR
TSL
|
|---|
| |