| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4562 |
|---|
| Symbol | lysC |
|---|
| ID | 6486595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 4429635 |
|---|
| End bp | 4430984 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642739788 |
|---|
| Product | aspartate kinase III |
|---|
| Protein accession | YP_002043470 |
|---|
| Protein GI | 194444588 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0527] Aspartokinases |
|---|
| TIGRFAM ID | [TIGR00656] aspartate kinase, monofunctional class
[TIGR00657] aspartate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.446451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 0.379136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGA TCGTTGTTTC CAAATTTGGC GGTACCAGCG TCGCTGATTT TGACGCCATG
AACCGTAGCG CGGATATCGT ACTTTCCGAC GCCAATGTTC GTTTAGTCGT GCTTTCCGCG
TCTGCCGGCA TCACTAATCT GCTGGTGGCG CTGGCCGAAG GGATGGAGCC TGGCGAACGT
TTCGCTACGC TCGACGCCAT CCGTAAAATC CAGTTCGATA TCCTTGATCG TCTGCGTCAT
CCGAATGTCA TTCGCGAAGA GATTGAACGC CTGCTGGAAA ACATTACTAT TCTGGCGGAG
GCGGCATCGC TGGCGACATC GGCAGCCCTG ACCGATGAAC TGGTCAGCCA CGGCGAGCTG
ATGTCTACCC TGCTATTTGT TGAGATCCTG CGTGAACGCG ACGTACAGGC CCACTGGTTC
GACGTGCGCA AAGTGATGCG TACCAGCGAT CGCTTTGGCC GTGCGGAACC GGACGTCGCA
GCGCTTGCGG AACTGGCCGC GCAGCAGTTG CTCCCGCGCC TGAGCGAAAC GTTGGTCATT
ACTCAGGGTT TTATCGGCAG TGAAAGCAAA GGCCGCACCA CGACATTAGG CCGCGGCGGC
AGCGACTATA CGGCAGCGTT GCTGGCTGAA GCGCTCCACG CCGCGCGGGT TGATATCTGG
ACAGATGTGC CCGGTATTTA CACCACCGAC CCGCGCGTAG TGCCTGTCGC GCAGCGAATT
GATGAAATCG ACTTTGAAGA AGCGGCGGAG ATGGCAACTT TCGGCGCAAA AGTACTGCAT
CCAGCCACCT TACTCCCGGC CGTGCGTAGC GATATCCCGG TCTTCGTTGG CTCCAGTAAA
GATCCGCAAG CGGGCGGTAC GCTGGTGTGC AATAAAACCC AAAACCCGCC GCTGTTCCGC
GCGCTGGCGC TGCGCCGCAA TCAAACGCTA TTGACGCTGC ACAGCCTGAA TATGCTGCAC
TCGCGAGGTT TCCTGGCAGA GGTGTTCGGC ATTCTGGCGC GGCATAATAT TTCGGTAGAT
CTGATTACCA CTTCGGAGGT GAGCGTCGCG CTGACGCTGG ATACTACCGG CTCCACCTCC
ACGGGCGATA CGTTACTGAC CCAATCCTTA TTGATGGAGC TTTCCGCGCT GTGTCGGGTA
GAAGTCGAAG AAGGACTGGC GCTGGTCGCG CTGATTGGCA ACAACCTGTC AAAAGCCTGC
GGTGTTGGTA AAGAAGTGTT TGGCGTCCTG GAACCGTTCA ACATTCGCAT GATTTGTTAC
GGCGCCTCCA GCCACAATCT GTGCTTCCTC GTGCCGGGAG ACGATGCCGA GAAAGTGGTG
CAAAAGCTAC ATCAGAACTT ATTTGAATAA
|
|---|
| Protein sequence | MTEIVVSKFG GTSVADFDAM NRSADIVLSD ANVRLVVLSA SAGITNLLVA LAEGMEPGER
FATLDAIRKI QFDILDRLRH PNVIREEIER LLENITILAE AASLATSAAL TDELVSHGEL
MSTLLFVEIL RERDVQAHWF DVRKVMRTSD RFGRAEPDVA ALAELAAQQL LPRLSETLVI
TQGFIGSESK GRTTTLGRGG SDYTAALLAE ALHAARVDIW TDVPGIYTTD PRVVPVAQRI
DEIDFEEAAE MATFGAKVLH PATLLPAVRS DIPVFVGSSK DPQAGGTLVC NKTQNPPLFR
ALALRRNQTL LTLHSLNMLH SRGFLAEVFG ILARHNISVD LITTSEVSVA LTLDTTGSTS
TGDTLLTQSL LMELSALCRV EVEEGLALVA LIGNNLSKAC GVGKEVFGVL EPFNIRMICY
GASSHNLCFL VPGDDAEKVV QKLHQNLFE
|
|---|
| |