Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4530 |
Symbol | |
ID | 6485649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 4405651 |
End bp | 4406520 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642739756 |
Product | 23S rRNA pseudouridine synthase F |
Protein accession | YP_002043438 |
Protein GI | 194442736 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.115437 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 79 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACCG ACACATCTAC CCGGCTTAAT AAATATATCA GTGAAAGCGG CATCTGTTCG CGTCGCGAGG CGGACCGTTT TATCGAACAG GGCAATGTTT TTATCAACGG CAAACGCGCC GCCATTGGCG ATCAGGTGGT CGCCGGGGAT GTTGTTAAAG TAAATGGTCG GTTGATTGAG CCGCGAGAAG CGGATGATTT AGTGCTGATT GCGCTGAATA AACCGGTTGG CATTGTCAGT ACCACTGAAG ACGGCGAACG CGACAATATT GTCGATTTTG TGAACCACAG CAAACGTATC TTCCCGATTG GTCGTCTGGA TAAAGACTCG CAGGGGCTGA TATTTCTGAC TAACCACGGC GATCTGGTCA ATAAGATTCT GCGTGCCGGT AACGATCACG AAAAAGAGTA TCTGGTGACG GTGGATAAAC CGATTACCGA CGAGTTTATA CGCGGTATGG GCGCTGGCGT GCCGATTCTG GGTACCGTCA CCAAAAAATG TAAGGTGAAA AAAGAGGCGC CGTTTGTCTT TCGCATTACC CTGGTGCAGG GATTAAACCG TCAGATCCGT CGTATGTGTG AATACTTTGG TTATGAAGTG ACGAAACTGG AGCGTACGCG CATTATGAAC GTCAGTCTGA GCGGGATTCC GCTGGGCGAG TGGCGCGATC TGACGGACGA TGAGCTGATC GATCTGTTTA AGTTGATTGA GCGTTCCTCT TCCGAAGCCA AACCAAAGGC CAAAGCGAAG CCGAAGACCA CGGGTATTAA GCGACCGGTC GTTGCGATCG AAAAAAGCAA TGAGAAAGCG CGCCCGGCAT CAAGCGGTAA GCGCTTTACC TCGCCGGGAC GAAAGAAGAA AGGACGTTAA
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Protein sequence | MLTDTSTRLN KYISESGICS RREADRFIEQ GNVFINGKRA AIGDQVVAGD VVKVNGRLIE PREADDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRI FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITDEFI RGMGAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEYFGYEV TKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIERSS SEAKPKAKAK PKTTGIKRPV VAIEKSNEKA RPASSGKRFT SPGRKKKGR
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