| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4487 |
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| Symbol | rpoC |
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| ID | 6484506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 4361467 |
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| End bp | 4365690 |
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| Gene Length | 4224 bp |
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| Protein Length | 1407 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642739720 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002043406 |
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| Protein GI | 194446147 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000000000604507 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAAGCG CAGACTAAAA CCGAAGAGTT TGATGCGATC
AAAATTGCTC TGGCTTCGCC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACGTTCAAA CCTGAGCGTG ACGGCCTTTT CTGCGCCCGT
ATCTTTGGGC CGGTAAAAGA CTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAACAC
CGTGGTGTTA TTTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT ACGCCGTGAG
CGTATGGGCC ACATCGAGCT GGCGTCCCCG ACTGCTCACA TCTGGTTCCT GAAATCGCTG
CCGTCCCGTA TCGGTCTGCT GCTCGATATG CCGCTGCGCG ATATCGAACG CGTACTGTAC
TTCGAATCTT ATGTGGTTAT CGAAGGCGGT ATGACCAACC TGGAACGTCA ACAGATCCTG
ACTGAAGAGC AGTATCTGGA CGCGCTGGAA GAGTTCGGTG ACGAATTCGA CGCGAAGATG
GGTGCGGAAG CTATCCAGGC CCTGCTGAAG AGCATGGATC TGGAGCAAGA GTGTGAAACT
CTGCGCGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAAAAGCT GACCAAGCGT
ATCAAACTGC TGGAAGCCTT CGTACAGTCT GGTAACAAGC CAGAGTGGAT GATCCTGACC
GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCGCTGGTTC CGCTGGATGG TGGTCGTTTC
GCGACTTCTG ACCTGAACGA TCTGTATCGT CGCGTGATCA ACCGTAACAA CCGTCTGAAG
CGTCTGCTGG ATCTGGCTGC GCCGGACATC ATCGTACGTA ACGAAAAACG TATGCTGCAG
GAAGCGGTTG ACGCCCTGCT GGATAACGGT CGTCGCGGTC GTGCGATCAC CGGTTCTAAC
AAGCGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AACAAGGTCG TTTCCGTCAG
AACCTGCTCG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TTATCACCGT AGGTCCATAC
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAAATGGCGC TGGAGCTGTT CAAACCGTTC
ATCTACGGCA AGCTGGAACT GCGTGGCCTT GCCACCACCA TCAAAGCCGC GAAGAAAATG
GTTGAGCGTG AAGAAGCTGT CGTTTGGGAT ATCCTGGACG AAGTTATCCG CGAACACCCG
GTACTGCTGA ACCGTGCGCC GACTCTGCAC CGTCTGGGTA TCCAGGCATT TGAACCGGTA
CTGATCGAAG GTAAAGCTAT CCAGCTGCAC CCGCTGGTGT GTGCGGCCTA TAACGCCGAC
TTCGATGGTG ACCAGATGGC TGTTCACGTA CCGCTGACGC TGGAAGCCCA GCTTGAAGCG
CGTGCGCTGA TGATGTCTAC CAACAACATC CTGTCTCCGG CGAACGGCGA ACCTATCATC
GTTCCGTCTC AGGACGTGGT ACTGGGTCTG TACTACATGA CCCGTGACTG TGTTAACGCC
AAAGGCGAAG GCATGGTGCT GACTGGCCCG AAAGAAGCTG AGCGTATCTA TCGCGCAGGT
CTGGCCTCTC TGCATGCGCG CGTTAAAGTG CGTATCACTG AATATGAAAA AGATGAAAAC
GGCGAATTCG TTGCGCACAC CAGCCTGAAA GACACGACCG TTGGTCGCGC CATTCTGTGG
ATGATCGTAC CGAAAGGTCT GCCTTTCTCC ATCGTCAACC AGGCGCTGGG CAAGAAAGCG
ATCTCCAAAA TGCTGAACAC TTGCTACCGT ATTCTGGGCC TGAAACCGAC CGTTATTTTT
GCGGACCAGA CGATGTACAC CGGCTTTGCT TATGCAGCGC GTTCAGGTGC GTCCGTTGGT
ATTGATGACA TGGTCATCCC GGAGAAAAAA CACGAGATCA TCTCTGAGGC GGAAGCTGAA
GTTGCTGAGA TCCAGGAGCA GTTCCAGTCT GGTCTGGTAA CCGCTGGCGA ACGCTATAAC
AAAGTTATCG ATATCTGGGC TGCGGCGAAC GATCGTGTAT CCAAAGCGAT GATGGATAAC
CTGCAAACCG AAACCGTGAT TAACCGTGAC GGCCAGGAAG AGCAGCAGGT CTCCTTCAAC
AGCATCTATA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGCTG
GCAGGTATGC GTGGTCTGAT GGCGAAGCCG GATGGCTCCA TCATCGAAAC GCCAATCACC
GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACGCA CGGTGCGCGT
AAAGGTCTGG CGGATACCGC ACTGAAAACC GCGAACTCCG GTTATCTGAC CCGTCGTCTG
GTTGACGTCG CGCAGGATCT GGTGGTGACC GAAGATGACT GTGGTACGCA CGAAGGTATC
CTGATGACCC CGGTTATCGA GGGTGGCGAC GTGAAAGAGC CGCTGCGTGA CCGCGTTCTG
GGTCGTGTGA CGGCGGAAGA TGTGCTGAAA CCGGGTACCG CGGACATTCT GGTTCCACGC
AACACGCTGC TGCACGAACA GTGGTGTGAC CTGCTGGAAG CAAACTCCGT TGACGCCGTT
AAAGTGCGTT CCGTTGTATC CTGCGACACC GACTTTGGTG TATGTGCGCA CTGCTATGGT
CGTGACCTGG CGCGTGGCCA CATCATCAAC AAAGGTGAAG CTATCGGCGT TATCGCGGCA
CAGTCCATCG GTGAACCGGG TACACAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCGCGTG CGGCTGCTGA ATCCAGCATC CAGGTTAAGA ACAAAGGTAG CATCAAGCTC
AGCAACGTGA AGTCGGTTGT GAACTCCAGC GGTAAACTGG TTATCACTTC CCGTAACACC
GAACTGAAGC TGATCGACGA ATTCGGTCGT ACCAAAGAGA GCTATAAAGT GCCTTATGGC
GCTGTCATGG CGAAAGGTGA TGGCGAGCAG GTTGCCGGCG GCGAAACCGT GGCAAACTGG
GACCCGCACA CCATGCCGGT TATCACCGAA GTGAGTGGTT TCATCCGCTT CACTGACATG
ATCGACGGTC AGACCATTAC GCGTCAGACC GACGAACTGA CCGGTTTGTC TTCGCTGGTG
GTTCTGGATT CGGCTGAACG TACTACCGGT GGTAAAGATC TGCGTCCGGC GCTGAAAATC
GTTGATGCTC AGGGTAATGA CGTTCTGATC CCGGGTACCG ATATGCCTGC GCAGTACTTC
CTGCCGGGTA AAGCGATTGT ACAGCTGGAA GATGGCGTAC AGATCAGTTC TGGTGACACC
CTGGCGCGTA TTCCGCAGGA ATCCGGCGGT ACCAAGGATA TCACCGGTGG TCTGCCGCGC
GTTGCCGACC TGTTCGAAGC GCGTCGTCCG AAAGAACCGG CAATCCTTGC TGAAATCGCA
GGTATCGTTT CCTTCGGTAA AGAAACCAAA GGCAAACGTC GTCTGGTGAT CACGCCGGTT
GATGGTAGTG ACCCGTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA
GGGGAACGTG TAGAACGTGG TGATGTGATT TCCGATGGTC CGGAAGCGCC GCACGACATT
CTGCGTCTGC GTGGTGTTCA TGCTGTGACG CGTTACATTG TTAACGAAGT TCAGGATGTA
TACCGTCTGC AGGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG
CTGCGTAAAG CGACCATCGA AAGCGCCGGT AGTTCCGACT TCCTGGAAGG CGAACAGGTT
GAATACTCTC GCGTCAAGAT CGCTAACCGC GAGCTGGAAG CGAACGGCAA AGTGGGGGCT
ACCTTCTCCC GCGATCTGCT GGGTATTACC AAAGCGTCTC TGGCAACCGA ATCGTTCATC
TCTGCCGCAT CGTTCCAGGA GACCACGCGT GTCCTGACCG AAGCAGCCGT TGCGGGTAAA
CGCGACGAAC TGCGCGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT TCCGGCCGGT
ACCGGTTATG CGTACCACCA GGATCGTATG CGCCGTCGCG CCGCGGGCGA GCAGCCAGCA
ACACCGCAGG TCACTGCGGA AGATGCATCT GCAAGCCTGG CAGAACTGCT GAACGCAGGT
CTGGGCGGTT CTGATAACGA GTAA
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| Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
GAEAIQALLK SMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG
LASLHARVKV RITEYEKDEN GEFVAHTSLK DTTVGRAILW MIVPKGLPFS IVNQALGKKA
ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEQQVSFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI LMTPVIEGGD VKEPLRDRVL
GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEANSVDAV KVRSVVSCDT DFGVCAHCYG
RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW
DPHTMPVITE VSGFIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTTG GKDLRPALKI
VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
VADLFEARRP KEPAILAEIA GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
LRKATIESAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TFSRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEQPA
TPQVTAEDAS ASLAELLNAG LGGSDNE
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