| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4387 |
|---|
| Symbol | |
|---|
| ID | 6486784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 4257722 |
|---|
| End bp | 4260163 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642739627 |
|---|
| Product | gp24 |
|---|
| Protein accession | YP_002043321 |
|---|
| Protein GI | 194445727 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.0182 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA ACCTGAGGCT TGAGGTATTG CTGAAAGCGG TCGACCAGGC GACCCGACCG
CTTAAATCCA TCCAGACCGC GAGTAAAACT CTGTCGGGTG ATATTCGCAA CACACAAAAG
GGGCTGCGCG ACCTGAACGG TCAGGCGTCG AAAATCGACG GCTTTCGTAA GGCAAGCGCG
CAACTGGCCG TAACCGGTCA GGCGCTTGAT AAGGCGAAGC GCGAAGCCGG TGAGCTGGCT
GCGCAGTTTA AAAACACTAC CAGTCCGACC CGCGCGCAGG CGCAGGCGCT CGAAGCGGCA
AAACGTGCCG CCTCTGAGCT GCAGATGAAA TATAACAGCC TGAGAACATC GGTACAGCGC
CAGCGCTCCG AGCTGATGCA GGCCGGTATT AACATCCGCA CCCTGTCTGC CGATGAGCGT
CGGCTCAAAA CCTCCATCAG CGAAACGACG GTGCAGCTTA ACCGCCAGCG TGAGGCACTG
GCGCGTGTCA GTGCGCAGCA GGCGAAATTA AGCCGGGTGA AAGAACGATA CAAATCAGGT
AAAGAGCTTG CCGGTAACAT GGCTGCAGCA GGTGCTGCCG GGGTCGGTAT TGCGACGGCG
GGAACGATGG CCGGGGTTAA ATTACTGATG CCCGGTTATG ACTTTGCACA GAAAAACTCC
GAGCTGCAGG CTGTGCTCGG GGTTGATAAA CAGTCGCCAG AAATGCAGGC GTTACGTAAA
CAGGCGCGCC AGCTCGGTGA CAATACCGCC GCTTCTGCTG ATGATGCAGC CAGTGCGCAG
ATTATCATTG CAAAAGGTGG TGGTGATGCG GCAGCTATAG CGGCTATGAC GCCTGTGACT
CTCAACCTGT CACTTGCGAA CAGAAAAACA ATGGAGGAAA ACGCGCAACT GTTGATGGGG
ACAAAAGCCG CCTTTCAGCT TTCTAATGAC GCGGCTGCAC ATATTGGTGA TGTTCTTTCA
ACCACGATGA ACAAAACCAC CGCTGATTTT CAGGGACTAA GTGACTCATT AAGTTACCTT
GCCCCTGTTG CGAAAAATGC CGGAGTGAGT CTTGAACAAG CGGCGGCGAT TACCGGCACA
CTTCATGATA ATAACATCAG GGGGTCAATG GCTGGGACGG GCGGCGCGGC TGTAATAACG
AGACTACAGG CACCAACAGG CAAAGCATAC GATGCCCTCA AAGAGTTGGG TGTTAAAACC
TCGGACAGCA AAGGCAATAC GCGCCCGTTA TTTACCATCC TGAAAGAAAT GCAGGCCAGT
TTTGAGCGCA ACAAGCTCGG AACTGGTCAG AAAGCTGAAT ATGTGAAAAC CATATTCGGC
GAGGAGGCCA TGAAGTCTGC AAGTGTGCTG ATGGCCGCAG CGACAAGCGG AAAGCTCGAT
AAACTCACCG CTACGATAAA GGCATCCGAC GGAAAAACCG AGGAACTGGT CAAGGTTATG
CAGGACAACC TCGGCGGCGA CTTCAAAGAG TTCCAGTCTG CTTATGAGGC TGTCGGTACC
GACCTATACG ACCAGCAAGA TAGCTCACTG CGCAAGCTCA CCCAAACCGC CACGCAGTAT
GTGTTAAAAC TCGACAACTG GATCAAGGAT AACAAGGAAT TAGCGGAAAC TATCGGCATC
ATCGCCGGTG GCGCACTTGC TCTGATTGGT ATTATCGGCG GCATTGGTCT CGTTGCGTGG
CCGGTTGTCA TGGGGATTAA CGCCATTATT GCCGCTGCTG GCGTGCTGGG TACGGTCTTT
ACTGTTGCTG GTAGTGCCAT TGTGACAGCG CTCGGTGCGA TTACCTGGCC GATTGTGGCT
GTTGGTGCGG CGATTGTGGC CGGGGCGCTA CTTATTCGTA AATACTGGGA GCCCATCAGC
GCATTTTTTA CGGGGGTGAT TGAGGGCATC ATGAGCGCCT TTGCGCCGGT CGGGGAAATG
TTCGCACCAC TGGCTCCCAT CTTTGACGGA CTCGGTGAGA AGCTGCGCGG CGTCTGGCAG
TGGTTTAAAG ACCTGATTGC ACCGGTCAAG GCCACGCAGG AGACGCTTGA TAGCTGCAAA
AATGTCGGCG TCATATTTGG TCAGGCACTG GCCGATGCGC TGATGTTGCC TCTGAATATT
TTCAATAAGC TGCGTGGTGG TCTCGATGTA ATTCTCGAAA AGCTCGGCCT TGTTAAAAAG
GAATCGAGCA GTATTGATAC GGAAACGGCA AAAACGCCGC TGGTTGGTCA GGGTGGAGGG
TATATTCCGA CAACCAGCTC GCTTGGTGGG TATCAGGCTT ATCAGCCTGT CACGGCCCCC
GCCGGTCGTA CCTATATTGA CCAGAGCAGC CCGACCTATC AAATCAACCT GCCGGGTGGC
GGCGCGCCGG GTGGTCAATT GGGTAACCAG TTGCAGGATG CGTTAGAAAA ATATGAACGC
GACAAGCGAG CCAAAGCCCG CGCTAGCATG ATGCACGATT AA
|
|---|
| Protein sequence | MSNNLRLEVL LKAVDQATRP LKSIQTASKT LSGDIRNTQK GLRDLNGQAS KIDGFRKASA
QLAVTGQALD KAKREAGELA AQFKNTTSPT RAQAQALEAA KRAASELQMK YNSLRTSVQR
QRSELMQAGI NIRTLSADER RLKTSISETT VQLNRQREAL ARVSAQQAKL SRVKERYKSG
KELAGNMAAA GAAGVGIATA GTMAGVKLLM PGYDFAQKNS ELQAVLGVDK QSPEMQALRK
QARQLGDNTA ASADDAASAQ IIIAKGGGDA AAIAAMTPVT LNLSLANRKT MEENAQLLMG
TKAAFQLSND AAAHIGDVLS TTMNKTTADF QGLSDSLSYL APVAKNAGVS LEQAAAITGT
LHDNNIRGSM AGTGGAAVIT RLQAPTGKAY DALKELGVKT SDSKGNTRPL FTILKEMQAS
FERNKLGTGQ KAEYVKTIFG EEAMKSASVL MAAATSGKLD KLTATIKASD GKTEELVKVM
QDNLGGDFKE FQSAYEAVGT DLYDQQDSSL RKLTQTATQY VLKLDNWIKD NKELAETIGI
IAGGALALIG IIGGIGLVAW PVVMGINAII AAAGVLGTVF TVAGSAIVTA LGAITWPIVA
VGAAIVAGAL LIRKYWEPIS AFFTGVIEGI MSAFAPVGEM FAPLAPIFDG LGEKLRGVWQ
WFKDLIAPVK ATQETLDSCK NVGVIFGQAL ADALMLPLNI FNKLRGGLDV ILEKLGLVKK
ESSSIDTETA KTPLVGQGGG YIPTTSSLGG YQAYQPVTAP AGRTYIDQSS PTYQINLPGG
GAPGGQLGNQ LQDALEKYER DKRAKARASM MHD
|
|---|
| |