| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4338 |
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| Symbol | |
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| ID | 6486497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 4223710 |
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| End bp | 4225017 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642739582 |
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| Product | trap dicarboxylate transporter subunit DctM |
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| Protein accession | YP_002043276 |
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| Protein GI | 194444602 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.00909615 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGACC CTATTTTTGC GTCCTGTACG CTAATTGCCG TCTTTGTTGT TTTACTGGCC
ATGGGCGCGC CTATCGGGAT CTGCATCGTT ATCGCCTCTT TCAGCACCAT GATGCTGGTA
CTGCCTTTCG ATATTTCGAT GTTCGCCACC GCGCAAAAAA TGTTCTCCAG CCTGGACAGT
TTTGCCTTGC TGGCCGTGCC GTTCTTCGTT TTGTCCGGGG TGATCATGAA TAGCGGGGGA
ATTGCCGCCC GGCTGGTCAA TTTTGCCAAA CTGTTTACTG GCAAACTGCC CGGCTCGCTC
TCTTATACCA ACATCGTCGG CAATATGATG TTCGGTGCAA TTTCCGGATC GGCAATTGCC
GCCTCAACCT CCATCGGCGG CGTGATGGTG CCGATGAGCG CGCGCGAAGG TTACGATCGC
GGCTTTGCGG CCGCGGTGAA TATCGCCTCC GCGCCGACGG GAATGTTAAT TCCGCCCACC
ACGGCTTTTA TCCTTTATGC GCTGGCAAGC GGGGGAACAT CGATTGCCGC TCTGTTCGCC
GGCGGTCTGG TCGCGGGAGT GCTGTGGGGC GTTGGCTGTA TGCTGGTCAC GCTGGTAGTC
GCTAAGCGTC GAAATTATCG GGTTTTCTTC ACCGTCCAAA AAGGCATGGC GCTAAAAGTT
GCCGTTGAGG CCATTCCCAG CCTGTTACTG ATCGTGATTA TCGTCGGCGG CATTGTGCAG
GGGATTTTCA CCGCCATTGA AGCCTCCGCG ATTGCCGTGG TGTATACGTT ATTGCTGACG
ATGGTGTTTT ACCGCACGCT GAAAATTAAG GATTTGCCTT CGATTTTGCT CCAGACAGTG
GTAATGACCG GGGTCATCAT GTTCCTGCTG GCAACCTCTT CGGCGATGTC CTTCTCAATG
TCGATCACCA ATATTCCTGC GGCGCTGAGC GATATGATCC TCGGTATTTC CGCCAATAAA
CTGGTTATCC TGTTAGTCAT TACCGTCTTT TTGTTGATTA TCGGCGCATT TATGGATATC
GGTCCGGCCA TTCTGATTTT TACCCCGATT CTGCTGCCGA TCATGGCTAA ACTGGGCGTC
GATCCGGTGC ATTTCGGCAT TATCATGATC TATAACCTGG CGATTGGCAC CATTACGCCG
CCAGTTGGCA GTGGTTTATA TGTCGGGGCG AGCGTCGGTA AGGTCAAAGT TGAGGAAGTG
ATTAAACCGT TGCTGCCTTT TTACGGCGCG ATTATCGGCG TTCTGTTATT AATTACCTAC
ATTCCGGAAA TCACACTGTT CTTACCCCGT CTACTGGGCA TCATGTAA
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| Protein sequence | MIDPIFASCT LIAVFVVLLA MGAPIGICIV IASFSTMMLV LPFDISMFAT AQKMFSSLDS
FALLAVPFFV LSGVIMNSGG IAARLVNFAK LFTGKLPGSL SYTNIVGNMM FGAISGSAIA
ASTSIGGVMV PMSAREGYDR GFAAAVNIAS APTGMLIPPT TAFILYALAS GGTSIAALFA
GGLVAGVLWG VGCMLVTLVV AKRRNYRVFF TVQKGMALKV AVEAIPSLLL IVIIVGGIVQ
GIFTAIEASA IAVVYTLLLT MVFYRTLKIK DLPSILLQTV VMTGVIMFLL ATSSAMSFSM
SITNIPAALS DMILGISANK LVILLVITVF LLIIGAFMDI GPAILIFTPI LLPIMAKLGV
DPVHFGIIMI YNLAIGTITP PVGSGLYVGA SVGKVKVEEV IKPLLPFYGA IIGVLLLITY
IPEITLFLPR LLGIM
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