| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4258 |
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| Symbol | ubiD |
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| ID | 6482807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 4148337 |
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| End bp | 4149815 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642739508 |
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| Product | 3-octaprenyl-4-hydroxybenzoate decarboxylase |
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| Protein accession | YP_002043207 |
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| Protein GI | 194445783 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.772564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 0.840563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCA TGAAATATCA CGATTTACGC GACTTCCTGA CGCTACTTGA GCAGCAGGGG
GAACTAAAAC GCATCACGCT ACCTGTGGAT CCTCATCTGG AAATCACGGA AATCGCTGAC
CGCACGCTGC GTGCCGGTGG ACCGGCGTTG CTGTTTGAAA ATCCTAAAGG TTACGCCATG
CCGGTGCTGT GCAACCTTTT TGGCACGCCA AAACGCGTGG CGATGGGCAT GGGGCAGGAT
GATGTTTCCG CATTACGGGA AGTGGGTAAA TTATTAGCGT TTCTGAAAGA ACCTGAGCCG
CCGAAAGGCT TTCGCGATCT GTTTGACAAG CTGCCGCAGT TTAAGCAAGT GCTGAATATG
CCGACGAAAC GGTTACGCGG CGCGCCTTGC CAGCAGAAAA TCGCGTCTGG CGATGATGTC
GATTTAACGC GTCTTCCTGT CATGACCTGT TGGCCGGACG ACGCCGCGCC GTTGATTACC
TGGGGACTGA CGGTAACGCG TGGCCCGCAC AAAGAACGGC AAAACCTGGG CATTTATCGT
CAGCAGTTGA TAGGTAAAAA TAAGCTGATT ATGCGCTGGC TGTCTCACCG CGGCGGCGCG
CTGGATTTTC AGGAGTGGTT AGCCGCGCGT CCGGGTGAAC GTTTCCCGGT CTCCGTCGCA
TTGGGCGCCG ATCCGGCGAC GATACTTGGC GCCGTGACTC CAGTTCCCGA TACTCTGTCG
GAGTATGCCT TTGCGGGCCT GCTGCGCGGC ACGAAAACTG AAGTGGTTAA ATGTCTTTCT
AACGATCTGG AAGTGCCTGC CAGCGCCGAG ATTATCCTTG AAGGTTACAT TGAGCCGGGA
GAGATGGCGC CGGAAGGGCC GTATGGCGAT CATACGGGCT ATTATAATGA AGTGGATAAC
TTTCCTGTCT TTACCGTCAC GCATATTACG CAGCGTGAGG ATGCCATCTA TCACTCCACC
TATACCGGGC GTCCGCCCGA TGAGCCTGCG GTATTAGGGG TGGCGCTCAA TGAAGTCTTC
GTGCCTATTC TGCAAAAACA GTTTCCGGAA ATCGTCGACT TTTATCTGCC GCCGGAAGGG
TGTTCTTACC GCCTGGCGGT AGTGACGATG AAAAAGCAGT ACGCTGGTCA TGCGAAACGC
GTCATGATGG GCGTCTGGTC GTTTTTGCGC CAGTTTATGT ATACGAAATT TGTTATCGTT
TGCGATGATG ACGTTAACGC ACGCGACTGG AATGATGTGA TCTGGGCGAT TACCACCCGT
ATGGACCCTG CGCGGGATAC GGTGCTGGTT GAAAATACGC CGATTGACTA CCTGGATTTT
GCCTCGCCGG TCTCCGGGCT GGGTTCAAAA ATGGGGCTGG ATGCCACAAA CAAATGGCCG
GGCGAAACCC AACGCGAGTG GGGTCGTCCT ATTGTTAAAG ATCCTGAAGT TACCGCGCGT
ATTGATGCGA TTTGGGATGA GCTGGCTATC TTTAAATAA
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| Protein sequence | MDAMKYHDLR DFLTLLEQQG ELKRITLPVD PHLEITEIAD RTLRAGGPAL LFENPKGYAM
PVLCNLFGTP KRVAMGMGQD DVSALREVGK LLAFLKEPEP PKGFRDLFDK LPQFKQVLNM
PTKRLRGAPC QQKIASGDDV DLTRLPVMTC WPDDAAPLIT WGLTVTRGPH KERQNLGIYR
QQLIGKNKLI MRWLSHRGGA LDFQEWLAAR PGERFPVSVA LGADPATILG AVTPVPDTLS
EYAFAGLLRG TKTEVVKCLS NDLEVPASAE IILEGYIEPG EMAPEGPYGD HTGYYNEVDN
FPVFTVTHIT QREDAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG
CSYRLAVVTM KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW NDVIWAITTR
MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGRP IVKDPEVTAR
IDAIWDELAI FK
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