| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4227 |
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| Symbol | dapF |
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| ID | 6482666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 4117017 |
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| End bp | 4117841 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642739478 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002043177 |
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| Protein GI | 194443293 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.642483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAATTCT CTAAAATGCA TGGCCTTGGC AACGATTTTA TGGTCGTCGA CGCGGTAACG
CAGAATGTCT TTTTTTCGCC GGAACTGATT CGTCGGCTAT CCGACAGACA CCTGGGCGTA
GGGTTCGATC AGCTGCTGGT GGTTGAGCCG CCCTATGATC CTGAGTTGGA CTTTCATTAC
CGCATCTTCA ACGCCGACGG CAGTGAAGTC TCGCAGTGCG GCAATGGCGC GCGCTGTTTC
GCGCGATTTG TTCGCCTGAA AGGGCTAACC AATAAACGCG ACATTCGGGT CAGTACCGCG
AATGGCCGGA TGGTACTGAG CGTCACGGAA GATGAACTGG TGCGGGTGAA TATGGGGGAG
CCAAACTTTG AACCCGCGCA GGTGCCTTTT CGCGCCAACA AAGCGGAAAA GACGTATATT
ATGCGAGCGG CGGAACAGAC CATACTGTGC GGCGTGGTTT CAATGGGCAA TCCGCACTGT
GTCATTCAGG TTGATAACGT CGACACGGCG GCCGTTGAAA CACTGGGGCC GGTTCTGGAA
AGCCATGAGC GTTTTCCGGA ACGCGCCAAC ATTGGTTTTA TGCAGGTTGT AAGACGTGAG
CATATCCGGC TGCGAGTCTA TGAACGCGGC GCAGGGGAGA CCCGCGCGTG CGGCAGCGGC
GCGTGCGCTG CCGTTGCCGT GGGGATTCAG CAGGGGCTGC TGGCTGAAGA AGTACGCGTG
GAATTACCGG GCGGTCGGCT GGATATCGCC TGGAAAGGTC CGGGTCATCC GTTATACATG
ACTGGTCCGG CGGCACATAT CTACGACGGA TTTATCCATT TATGA
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| Protein sequence | MQFSKMHGLG NDFMVVDAVT QNVFFSPELI RRLSDRHLGV GFDQLLVVEP PYDPELDFHY
RIFNADGSEV SQCGNGARCF ARFVRLKGLT NKRDIRVSTA NGRMVLSVTE DELVRVNMGE
PNFEPAQVPF RANKAEKTYI MRAAEQTILC GVVSMGNPHC VIQVDNVDTA AVETLGPVLE
SHERFPERAN IGFMQVVRRE HIRLRVYERG AGETRACGSG ACAAVAVGIQ QGLLAEEVRV
ELPGGRLDIA WKGPGHPLYM TGPAAHIYDG FIHL
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