Gene SNSL254_A4171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4171 
Symbol 
ID6482511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp4065231 
End bp4065935 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content51% 
IMG OID642739427 
ProductGntR family transcriptional regulator 
Protein accessionYP_002043136 
Protein GI194446035 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000336109 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTTAA GCGCACAACA ATTAGCCGCA CAGAAAAATC TATCCTATGT TCTGGCTGAA 
AAGCTGGCGC AGCGGATATT AAAGGGTGAC TACGCCCCCG GTACGATTCT TCCCGGCGAA
ATAGAACTGG GCGAGCAGTA CGGCGTAAGT CGAACGGCAG TTCGCGAAGC GGTGAAAACG
TTGACGGCTA AAGGCATGGT GCTACCCCGT CCGCGCATTG GTACGCGGGT GATGCCGCAG
GGAAACTGGA ACTTTCTGGA TCAAGAGCTG CTGACCTGGT GGATGACGGA AGAAAATTTT
CATCAGGTGG TGGATCATTT TCTGGTGATG CGTATTAGCC TGGAGCCGCA AGCCTGCCTG
CTGGCGGCGA CTCTTGGCAC ACCGGAGCAG AAAGCGCGGC TTAATGCCTT AATGGAAGAG
ATGGTCGCGC TGAAAAAGCA TTTTAAGCGT GAACGCTGGA TTGAAGTGGA TATGGCGTGG
CACGAGCATA TCTACGAAAT GAGCGCCAAT CCCTTTCTAA TCTCTTTTGC TACGCTATTT
CATTCGGTTT ATCACACTTA CTTTACCTCA ATCACCTATA ACGAGGTGGT AAAGCTGGAT
TTGCACCAGG CCATTGTTGA TGCCATCGCT GATGGCGACG GCGAACGCGC TTTCCAGGCC
TGTCAGGCGT TGTTAATAGC GCCCAATGAG AGACCAGATA ATTAA
 
Protein sequence
MPLSAQQLAA QKNLSYVLAE KLAQRILKGD YAPGTILPGE IELGEQYGVS RTAVREAVKT 
LTAKGMVLPR PRIGTRVMPQ GNWNFLDQEL LTWWMTEENF HQVVDHFLVM RISLEPQACL
LAATLGTPEQ KARLNALMEE MVALKKHFKR ERWIEVDMAW HEHIYEMSAN PFLISFATLF
HSVYHTYFTS ITYNEVVKLD LHQAIVDAIA DGDGERAFQA CQALLIAPNE RPDN