| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4118 |
|---|
| Symbol | |
|---|
| ID | 6485659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 4007218 |
|---|
| End bp | 4008408 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642739374 |
|---|
| Product | mandelate racemase/muconate lactonizing enzyme family protein |
|---|
| Protein accession | YP_002043083 |
|---|
| Protein GI | 194446418 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.128808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 85 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA CCAGCGTTGA TATTATTGAT GTGGCGAACG ATTTTGCGTC CGCCACCAGC
AAATGGCGTC CGGTGGTGGT AAAAATTAAT ACCGACGAGG GCATTTCCGG TTTTGGCGAA
GTGGGGCTGG CTTACGGTGT CGGCGCCTCC GCAGGCATCG GCATGGCAAA AGATTTAGCC
GCCATTATCA TCGGCATGGA CCCGATGAAT AACGAAGCTA TCTGGGAAAA GATGCTCAAA
AAAACCTTCT GGGGGCAGGG CGGCGGCGGC ATCTTTTCCG CTGCGATGAG CGGTATTGAT
ATCGCGCTGT GGGATATCAA AGGTAAAGCG TGGAGCGTGC CGCTGTATAA GATGCTCGGC
GGTAAAAGCC GCGAGAAAAT CAGAACCTAC GCCAGTCAGC TACAGTTTGG TTGGGGGGAC
GGCAGCGATA AAGATATGCT GACCGAGCCG GAACAGTATG CGCAGGCCGC GCTGACCGCC
GTCAGCGAAG GCTATGACGC GATAAAAGTG GATACCGTCG CAATGGATCG CCACGGCAAC
TGGAACAAAC AAAACCTCAA CGGGCCGCTC ACCGACAAAA TCCTGCGTCT GGGCTACGAC
CGTATGGCCG CCATTCGCGA TGCGGTCGGC CCGGACGTGG ATATCATCGC CGAAATGCAT
GCCTTTACCG ACACCACCTC GGCGATTCAG TTTGGCCGCA TGATAGAAGA GCTGGGCATC
TTCTACTACG AGGAACCGGT TATGCCGCTG AACTCTGGGC AGATGAAGCA GGTTGCCGAT
AAGGTCAATA TTCCGCTGGC AGCGGGTGAA CGTATCTACT GGCGCTGGGG ATACCGTCCT
TTCCTGGAGA ACGGCAGCCT GAGCGTGATT CAGCCCGATA TCTGCACCTG CGGCGGCATC
ACCGAAGTGA AGAAAATCTG CGATATGGCG CATGTTTACG ACAAAACGGT GCAAATCCAC
GTTTGCGGCG GGCCGATTTC CACGGCGGTG GCGCTGCATA TGGAAACCGC GATCCCTAAC
TTCGTCATCC ACGAACTGCA CCGGTATGCG CTGCTGGAGC CGAATACACA GACCTGTAAA
TACAACTACC TGCCGAAGAA CGGCATGTAC GACGTCCCGG AGCTTCCCGG CATCGGCCAG
GAACTGACCG AAGAAACCAT GAAAAAATCA CCAACCATCA CCGTAAAATA A
|
|---|
| Protein sequence | MKITSVDIID VANDFASATS KWRPVVVKIN TDEGISGFGE VGLAYGVGAS AGIGMAKDLA
AIIIGMDPMN NEAIWEKMLK KTFWGQGGGG IFSAAMSGID IALWDIKGKA WSVPLYKMLG
GKSREKIRTY ASQLQFGWGD GSDKDMLTEP EQYAQAALTA VSEGYDAIKV DTVAMDRHGN
WNKQNLNGPL TDKILRLGYD RMAAIRDAVG PDVDIIAEMH AFTDTTSAIQ FGRMIEELGI
FYYEEPVMPL NSGQMKQVAD KVNIPLAAGE RIYWRWGYRP FLENGSLSVI QPDICTCGGI
TEVKKICDMA HVYDKTVQIH VCGGPISTAV ALHMETAIPN FVIHELHRYA LLEPNTQTCK
YNYLPKNGMY DVPELPGIGQ ELTEETMKKS PTITVK
|
|---|
| |