| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4079 |
|---|
| Symbol | emrD |
|---|
| ID | 6485374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3970273 |
|---|
| End bp | 3971457 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642739336 |
|---|
| Product | multidrug resistance protein D |
|---|
| Protein accession | YP_002043045 |
|---|
| Protein GI | 194445701 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGC AGAGAAACGT CAATTTGTTG TTGATGTTGG TGTTACTGGT GGCCGTAGGG
CAGATGGCGC AAACCATTTA TATTCCCGCC ATCGCCGATA TGGCACAAGC GCTAAACGTC
CGGGAAGGCG CCGTCCAGAG CGTAATGGCT GCTTACCTCC TGACCTACGG CGTCTCGCAA
CTGTTTTACG GCCCGCTTTC CGACCGGGTT GGGCGCCGCC CCGTAATCCT CGTCGGCATG
TCTATTTTTA TGGTAGCGAC CCTGTTCGCC ATGACCACGC ATAGTTTGAC GGTGTTGATT
GCCGCCAGCG CCATGCAAGG GATGGGAACC GGCGTTGGCG GAGTAATGGC GAGAACGCTC
CCGCGCGATC TGTATGAAGG AACGCAACTT CGTCACGCCA ATAGCCTGTT AAATATGGGG
ATTCTGGTCA GCCCGCTGTT AGCGCCGCTG ATTGGCGGTC TGCTGGACAC CCTGTGGAAC
TGGCGCGCGT GTTACGCTTT CCTGCTGGTG CTTTGCGCTG GCGTCACCTT CAGCATGGCG
CGCTGGATGC CGGAAACCCG CCCCGCCGGC GCGCCGCGCA CACGGCTGAT CGCCAGCTAT
AAAACGCTGT TTGGCAACGG CGCATTTAAC TGTTATCTGC TGATGCTAAT CGGCGGGCTG
GCTGGCATTG CGGTCTTTGA AGCCTGTTCC GGCGTGCTGA TGGGGGCAGT ATTAGGTCTC
AGCAGTATGG TGGTAAGCAT TCTGTTTATT CTGCCGATTC CGGCGGCGTT CTTCGGCGCC
TGGTTTGCCG GACGCCCGAA TAAACGCTTC TCAACCCTGA TGTGGCAGTC AGTTATTTGC
TGTCTGCTGG CAGGCCTTAT GATGTGGATT CCCGGCTGGT TTGGCGTGAT GAACGTCTGG
ACGCTACTCA TCCCCGCTGC GCTGTTTTTC TTCGGCGCCG GGATGTTATT TCCACTGGCC
ACCAGCGGCG CGATGGAGCC GTTTCCGTTC CTCGCAGGCA CCGCTGGCGC GCTGGTCGGC
GGGCTGCAAA ATATTGGTTC CGGCGTACTG GCGTGGCTTT CGGCAATGCT GCCGCAAACC
GGTCAGGGCA GTCTGGGATT GCTGATGACC CTTATGGGAT TGCTGATCCT GGCGTGCTGG
CTGCCGCTGG CGTCACGGAT ATCGCATCAG GGGCAGACGG TTTAA
|
|---|
| Protein sequence | MKRQRNVNLL LMLVLLVAVG QMAQTIYIPA IADMAQALNV REGAVQSVMA AYLLTYGVSQ
LFYGPLSDRV GRRPVILVGM SIFMVATLFA MTTHSLTVLI AASAMQGMGT GVGGVMARTL
PRDLYEGTQL RHANSLLNMG ILVSPLLAPL IGGLLDTLWN WRACYAFLLV LCAGVTFSMA
RWMPETRPAG APRTRLIASY KTLFGNGAFN CYLLMLIGGL AGIAVFEACS GVLMGAVLGL
SSMVVSILFI LPIPAAFFGA WFAGRPNKRF STLMWQSVIC CLLAGLMMWI PGWFGVMNVW
TLLIPAALFF FGAGMLFPLA TSGAMEPFPF LAGTAGALVG GLQNIGSGVL AWLSAMLPQT
GQGSLGLLMT LMGLLILACW LPLASRISHQ GQTV
|
|---|
| |