| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4052 |
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| Symbol | |
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| ID | 6484957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3941909 |
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| End bp | 3944707 |
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| Gene Length | 2799 bp |
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| Protein Length | 932 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642739310 |
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| Product | sigma-54 dependent transcription regulator |
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| Protein accession | YP_002043019 |
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| Protein GI | 194443050 |
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| COG category | [K] Transcription |
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| COG ID | [COG3933] Transcriptional antiterminator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.0716366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGTA TTGAGATCGT ACTGGGAGAG CTGGAACGGC TGACGCGCGG GCTATGCCTT
GCCGATTTGG CGCAGGAGAC GGCGTTTACG GCGGAGGCGA TAGGTTTCAA TCTTGGGCTG
GCGCGTAACT CCGTCAGCAA AGATCTCAAT CAGTTATGGA ATGACGGCCT GGCAATCAAA
AGCCGTGGCC GCCCGGTCTA TTTTCTGCAT CGCCAGGCGC TGGAAACGTT GCTGGGACGA
CAGCTGGAAG AGTCTGAACG CGAAGTGCGG TCGGTGGCGG ATGTGCTGCC GCATGAAGAG
CATTACGCGC CCGACGATCC GTTTACCAGC CTGATTGGTT ACGATCGCAG CCTGCGCGAT
GCGGTAGAAA AAGGCCGTGC GGCGGTGCTC TATCCGCACG GTTTACACGT TCTGCTTACC
GGGCCGTCCG GCGTCGGTAA AACCTTTTTT GCGGAACTGA TGCACCGTTT CGCCTGTGAA
CAGGCGAGCG GCGCTATCCC GCCGCTGGTC TACTTTAATT GCGCGGAATA CGCCCATAAC
CCGGAACTGC TCTCCTCGCA TCTGTTTGGT CATCGGCAGG GGGCGTTTAC CGGCGCGAAT
GAACATAAAA CAGGCCTCGT GGAGCAGGCG GACGGTGGTT ATCTGCTGTT GGACGAGGTG
CACCGTCTGT CTTATGAAGG GCAGGAAAAG CTGTTCTCTA TTCTGGATAA AGGCGAGTAC
CGTCCGCTTG GCGTGAGCAG CCAGCCGCGA TCAATTTCGG TACGCCTGAT TTGCGCCACT
ACCGAGCCGG TCGGGTCGGC GCTGTTACGT ACTTTCCAGC GGCGTATTCA GGTATGCATT
GATTTGCCGG GCATTCGCCA GCGCTCCGTT GAAGAACAGA TCGAACTGAT CGTGGGGTTC
TTACAGCGGG AAAGCCGCAA AATAGAACGT ACGGTCAGCA TTGATAAACC GTTGTTGCTC
TGGTTGCTGA ATAAACCCCT TGAAGGCAAT ATCGGTCAGC TAAAAAGCGA TATTCAGTTT
CTCTGCGCTC AGGCGTGGGC ATCGGGAATG ACCGAGCATA ACGACACGCT ACAGCTGGAT
AAGCGGCTGG CGGAGATGTC GATTAACCCG ACGCCGGAAC AGCGTCTATT GGTGGATACT
CTGTTTGAGG GTAAAGCGCG GCTAAACATA GACGCGCGCA CGCTGCCCGC ATTGAAGACG
TCGCTGGCGA TCGGGGCGGA AATTGAAGAG AGCGACCTCT TTTACAGCTT CCTGACGCGC
GAGTATGTTA ATTTGCGCAA CAGTAACGTC CCCCCGGCGG AGACGCTGGC GATCCTGAAA
AATAAACTCA GCTCGATTTT TGAATACGGT CTCTACAGCC GCGACAGCGT GGCGCATCCG
CCGCGCTATG GCGACCAGAT TGAAGAGCGC GTGACGCTGC TGATAGGCTG CGTAGAGCAG
GTGTTGGGTT TTTCGCTGCC GGAAAATCTG GTTAACCCAC TGCGTAAACA CTTCCTGGCG
CTGATAGGCT ACGTGCAGCG CGGCCTGATC CCGCAGCTTT ACTCTTCCAG TTTGATCCTG
GATCGCTGCA AAGACGAATA TGACAACGCC ACGCTGCTGT GTCGGAAAAT CAACGAACTG
CTGCATATTC AGTGTCCGGC GACGGAAGTG GTCTGGCTAT GCCTGTTCCT GAAAGAGTGC
CGCCATTATC GTCAGCGCAT CGATGCCAGC CCCGACTGCG GGGTCATTTT GATCGCCCAC
GGCGCGACCA CCGCCACCAG TCAGGCGCAA TATGTCAACC GCGTGCTGGA GCGCGAGTTG
TTCAGCGCCA TCGACATGCC GTTTGAACAG TCGGTGCATG ACACGCTGGA AACGCTGACC
CAAATGATTC AAACCCGCCA ATATCGGCGG CTTATCCTGT TGGTGGACAT CGGTTCATTG
ATCCATTTCG GCAGCACCAT CAGTAAATTA TTCCAGATAG ATGTTTTGCT CATGCCGAAC
ATCACGCTGA CCAGTCTACT GGAAGTCGGG CTGGATTTAA GCTATGAAAC CAGCGACTTA
CCACAGTTGA CGGCGCTCCT GCAGAGTAAA AATATCCCCT GCCAGCTTTG TACGCCGCAG
CAGGAGAACG GCGGCAAAGT GCTGGTCATC TCCTGTATTA CCGGCATGGG AACGGCGGAA
AAAATCAAAA AGGTGCTGGA GGAGAGCTTT GGCGAACTGA TGTCGCAGGA CACCAGGATG
GTGATCCTTG ATTATAACGA GGTACGTAGT CTGGAGCGCG TTCAGCAGGC ATTGAATGCC
AGCGAGCGGC TGGCGGGGAT TGTCGGCACT TTCCAGCCGG GGCTGCCGGA TATTCCGTTT
ATTTCGCTGG AAGAGCTTTT CTCCGAACAA GGGCCGGAAC TGGTGTTGAG CCTGTTAACG
CCCGATCTGT CCAACGCTGA ACGCCGTCTG GAGATGGAGC GCAGCGCCAT GCGCTTTATC
AGCGCGCTAA CGATGGAGAG TATCATCAAC CATATTTCCG TGCTTAACCC GCAGCGTATT
CTGAAAGAGA TGGAGGGCGT TTTTAACCAT CTGACGTCTT CGCTTTCCCT GAAACCAAGC
CGCCAGGTGA CACTGCGCTT CCTGATCCAC TGCTGCTGTA TGGTAGAGCG TATTGTGATT
AACCGAAAAC CGTTACAGAT GGCGTTGGAA AGTCAGCCGA ATCTGGACGC GCGCGCGTTT
AGTGTCATCA AATCCGCTTT TCTGCCGATC GAAGACGCCT ACGCCATCCG TTTATCGGAT
GCGGAATATT TTTATATCTA CGAACTGCTC TATAGTTAA
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| Protein sequence | MRRIEIVLGE LERLTRGLCL ADLAQETAFT AEAIGFNLGL ARNSVSKDLN QLWNDGLAIK
SRGRPVYFLH RQALETLLGR QLEESEREVR SVADVLPHEE HYAPDDPFTS LIGYDRSLRD
AVEKGRAAVL YPHGLHVLLT GPSGVGKTFF AELMHRFACE QASGAIPPLV YFNCAEYAHN
PELLSSHLFG HRQGAFTGAN EHKTGLVEQA DGGYLLLDEV HRLSYEGQEK LFSILDKGEY
RPLGVSSQPR SISVRLICAT TEPVGSALLR TFQRRIQVCI DLPGIRQRSV EEQIELIVGF
LQRESRKIER TVSIDKPLLL WLLNKPLEGN IGQLKSDIQF LCAQAWASGM TEHNDTLQLD
KRLAEMSINP TPEQRLLVDT LFEGKARLNI DARTLPALKT SLAIGAEIEE SDLFYSFLTR
EYVNLRNSNV PPAETLAILK NKLSSIFEYG LYSRDSVAHP PRYGDQIEER VTLLIGCVEQ
VLGFSLPENL VNPLRKHFLA LIGYVQRGLI PQLYSSSLIL DRCKDEYDNA TLLCRKINEL
LHIQCPATEV VWLCLFLKEC RHYRQRIDAS PDCGVILIAH GATTATSQAQ YVNRVLEREL
FSAIDMPFEQ SVHDTLETLT QMIQTRQYRR LILLVDIGSL IHFGSTISKL FQIDVLLMPN
ITLTSLLEVG LDLSYETSDL PQLTALLQSK NIPCQLCTPQ QENGGKVLVI SCITGMGTAE
KIKKVLEESF GELMSQDTRM VILDYNEVRS LERVQQALNA SERLAGIVGT FQPGLPDIPF
ISLEELFSEQ GPELVLSLLT PDLSNAERRL EMERSAMRFI SALTMESIIN HISVLNPQRI
LKEMEGVFNH LTSSLSLKPS RQVTLRFLIH CCCMVERIVI NRKPLQMALE SQPNLDARAF
SVIKSAFLPI EDAYAIRLSD AEYFYIYELL YS
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