Gene SNSL254_A4037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4037 
Symbol 
ID6485911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3927571 
End bp3928335 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content47% 
IMG OID642739295 
Producttranscriptional regulator C 
Protein accessionYP_002043004 
Protein GI194446068 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.975119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value0.932239 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATGGA TAATTAACGA TAATATTGAA TTTAATCCAG AAATGAATCG CCTGGCGTCA 
TTATCGAGGC CAGATCTCAA CATTATTCTG ACAACGCCCG CCAGCCGCTG CTTGCGCCTT 
CTGCTGGAAA ACGCCCCCTC CGTCGTCTCA CAACAAACAT TCTTTCAAAA AGTGTGGGAA 
GAAGACGGCA TGGTGGTGTC GGCAAATACG CTTTATCAGA ATATCTCCAT TATTCGCCGC 
GGATTACGTA CCGTTGGCGA AAATGAAGAT ACGCTGATAA TCACGGTTCC GCGTAGAGGC 
TTTCAGATTG AGCCTGGTGT GAGCATCATG ACCATCCGCA AAGACTTCGC TCAGGCAATA 
GAAAAAAAGG GTGAGACGCC ACCGCGTATG TCAGGGCGTT GGTTTAAACA TTATGTACCT 
GTACTTTGGA TGACCGGGAC ATTTGCTGTC GGTATTTTGC TTGGCACTAT CAGCTGGCAA 
ACCGTTCCCG ATAAGGATTT TTACGATCGC TACACGCTGG TTGAAACAAC TCAGGGCTGT 
CATTTTTTCT CGCGGAATGA AGATATCGAA AGCGGCAGCC GCTTTGCAAG CTATAAGTCA 
ATGATTCTAA AAACCGGTAT GGATTGTCAG AAATACCCAT GGGTCTATTT CCCTTCCAGC 
AGTCGCACCC CAGCGGTTAC GGCATTGATT TGTCAGCAAC CTTATAAAAC GCGCGGTGAT 
ACAGGTTGCG TGACGCTTTT TTTCCGCGGG GTGACACATG GGTAA
 
Protein sequence
MLWIINDNIE FNPEMNRLAS LSRPDLNIIL TTPASRCLRL LLENAPSVVS QQTFFQKVWE 
EDGMVVSANT LYQNISIIRR GLRTVGENED TLIITVPRRG FQIEPGVSIM TIRKDFAQAI 
EKKGETPPRM SGRWFKHYVP VLWMTGTFAV GILLGTISWQ TVPDKDFYDR YTLVETTQGC 
HFFSRNEDIE SGSRFASYKS MILKTGMDCQ KYPWVYFPSS SRTPAVTALI CQQPYKTRGD 
TGCVTLFFRG VTHG