Gene SNSL254_A3996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3996 
Symbol 
ID6483100 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3884203 
End bp3884901 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content33% 
IMG OID642739256 
Productlipopolysaccharide core biosynthesis protein 
Protein accessionYP_002042966 
Protein GI194444773 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.829287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTATTG AAAAAAAGGT TAAAAACTAT ACCGTCTTTG TCAAAAAAGA CGGTGAAAAA 
TACATTGAGA TATTCAAAGA TTTTCTATCT TATAATCATC AGGTTATTAA AGTCTTTCGT 
AATATAGAAG ATACAAAAGT TGTATTGATT AATACAGACT ACGGAAAATA TATTCTCAAA 
GTATTTAGCC CAAAAGTAAA AAATACTGAA CGCTTTTTCA AATCGTTAGT AAAAGGAGAT 
TACTACGAAA AGCTTTTTCA TCAGACAGAT CGTGTGCGGC GTGAAGGGTT TGCGGCGCTT 
AATGATTTTT ACCTGCTGGC GGAAATTAAA ACATTACGCT ATGTAAAAAC ATACGTGATG 
ATAATTGAGT ATATTGAAGG TATTGAACTT GTTGATATGC CAGAAATTTC TGACGAGGTG 
AGAGGGAAAA TCAAACAGTC GATATATTCT CTGCATCAGC ATGGTATGGT TTCGGGCGAT 
CCCCATAAAG GTAACTTTAT CCTGCAAGGC AATGAGATCA GAATTATCGA TTTGTCCGGA 
AAAAGACCTT CCAGACAACG AAAAGCAAAG GATCGTATTG ATTTAGAAAG ACATTATGGT 
ATCAAAAATA ATATGAGAGA TATCGGATTT TACTTATTGA TTTATAAGAA AAAACTTCGA 
AATTTCTTGC GTCGTATTAA GGGTAAGGAA AAGCGCTGA
 
Protein sequence
MIIEKKVKNY TVFVKKDGEK YIEIFKDFLS YNHQVIKVFR NIEDTKVVLI NTDYGKYILK 
VFSPKVKNTE RFFKSLVKGD YYEKLFHQTD RVRREGFAAL NDFYLLAEIK TLRYVKTYVM 
IIEYIEGIEL VDMPEISDEV RGKIKQSIYS LHQHGMVSGD PHKGNFILQG NEIRIIDLSG 
KRPSRQRKAK DRIDLERHYG IKNNMRDIGF YLLIYKKKLR NFLRRIKGKE KR