| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3976 |
|---|
| Symbol | |
|---|
| ID | 6482901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3862569 |
|---|
| End bp | 3863624 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642739235 |
|---|
| Product | LacI family transcriptional regulator |
|---|
| Protein accession | YP_002042945 |
|---|
| Protein GI | 194443984 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.637637 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATA ATGCGCGGAT AAATCAGCCA ATCTTTGCAG GGGCATCAGA CGTGAAGAGA
ACCAAATCAC CTCGTGCGCC GACGCTGGAA GATGTAGCAC GTAGCGCCGG GCTGTCTCCG
ATGACAGTCA GCCGGGCATT GAATTCGCCA CAACTGGTTC GCCCCAAAAC GGTTGAGAAA
GTCATGCAGG CGGTTCGCGT CACAGGCTAC ATACCCAACG CGTTAGCCGG TGGTCTGGCG
TCGCGACGGA GTAAATTAAT CGCTGTCGTC GTGCCGCAAA TTAACAACAA CATGTTTGTC
GATACCATCC AGTCACTGAG CGATGAACTG GCCCGACGCG GATATCACAT ATTGCTGTGC
GTGGCGGGAT ATACCGAACA AACGGAAGCG GAGTTGGTGG CGACACTGCT TTCCCGCCGC
CCCGATGGCG TGGTGCTTAC CGGGATCCAT CACACGATAG AACTGAAAAA GGTCATCCTG
AACGCGGCTA TTCCGGTGGT GGAAATTTGG GACTTAACGC CCACGCCGCT TGATATGCTG
GTCGGTTTTT CCCATGAAAA AGTCGGGCAG GCGACGGGGG AGTATCTTCT GAGTAAGGGC
TATCGTCGTC CCGGCTTGTT GTGGACCGCC GATCGCCGAG CCGCGCAACG TAAGCAGGGG
TTATGTAGTG TTCTTCAACG CCACGCTATT CATGCCGTAC CGCAGGTAGA TGTCCCCCTT
CCGGCATCGC TTTCGCTGGG GCGCAGCGGT TTAAGTCAGC TTTTTGACGA AGGGACGTTT
GATGTCATTG TTTGCAGTTC TGATACCCTG GCACAGGGGG CGATGATGGA GGCGGAAAGC
CGTGGTTTGC GCATCCCGCA TGATTTAGCG GTTATTGGTT TTGGCGACCT TGATTTTGCC
GCCAGCAATC GACCATCAAT TACTACCGTA AGCGTTGACA GACGCGCCAT TGGCCAGCGC
GCCGCTACGC TGTTGGCCGA TCGTATTGAA CAGAAACCGT GCGCAGAAGC TATTGTGGAT
ATTGGCTTTC ATTTGATTGA GCGAGAGTCC GCATAA
|
|---|
| Protein sequence | MMNNARINQP IFAGASDVKR TKSPRAPTLE DVARSAGLSP MTVSRALNSP QLVRPKTVEK
VMQAVRVTGY IPNALAGGLA SRRSKLIAVV VPQINNNMFV DTIQSLSDEL ARRGYHILLC
VAGYTEQTEA ELVATLLSRR PDGVVLTGIH HTIELKKVIL NAAIPVVEIW DLTPTPLDML
VGFSHEKVGQ ATGEYLLSKG YRRPGLLWTA DRRAAQRKQG LCSVLQRHAI HAVPQVDVPL
PASLSLGRSG LSQLFDEGTF DVIVCSSDTL AQGAMMEAES RGLRIPHDLA VIGFGDLDFA
ASNRPSITTV SVDRRAIGQR AATLLADRIE QKPCAEAIVD IGFHLIERES A
|
|---|
| |