| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3972 |
|---|
| Symbol | |
|---|
| ID | 6484849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3860000 |
|---|
| End bp | 3860776 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642739232 |
|---|
| Product | DNA-binding transcriptional repressor LldR |
|---|
| Protein accession | YP_002042942 |
|---|
| Protein GI | 194444073 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 0.773658 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTGTGA TACCAAAACG CCTGTCAGAC GAGATTGCCT CTCGCGTGCG GGCGCTGATT
GAAGAACAAA ACCTGGAAGC GGGCATGAAA TTGCCCGCCG AGCGCCAGTT GGCTCTACAG
CTTGGCGTAT CACGCAACTC TTTACGCGAA GCGCTGGCGA AGCTGGTCAG TGAAGGCGTG
CTGGTGAGTC GTCGCGGCGG CGGGACATTT GTCCGCTGGC AGCACGAAAC CTGGTCTGAA
CAGAATATCG TGCAACCGCT GAAAATGCTG ATGGCGAACG ATCCGGACTA CAGTTTCGAC
ATTCTGGAGG CCCGCCACGC CATTGAAGCC AGTACGGCCT GGCACGCCGC CATGCGTGCC
ACCGCTGCCG ACAAAGAGAA AATCAGACTC TGCTTTGATG CGACGCTCAG CGAAGACCCG
GATCTCGCCT CCCAGGCCGA CGTGCGCTTT CATCTGGCGA TCGCGGAAGC CTCGCACAAT
GTGGTGCTGT TGCAAACGAT GCGCGGTTTC TTCGACGTCC TGCAATCCTC CGTCAAACAG
AGTCGCCAGC GTATGTATCT CGTTCCGCCC GTATTCTCAA AGCTGACGGA ACAACACCAG
GCAGTGATGG ACGCCATTCT GGACGGTAAC GCCGAGGGCG CGCGTAAAGC GATGATGGCG
CACCTCAGTT TTGTCCACAC CACGATTAAA CGATTTGATG AAGACCAGGC CCGCCAGGCG
CGTATTACCC GCCTGCCCGG CGACCATAAT GAGATGACCA GGGAGAATAA ATCATGA
|
|---|
| Protein sequence | MIVIPKRLSD EIASRVRALI EEQNLEAGMK LPAERQLALQ LGVSRNSLRE ALAKLVSEGV
LVSRRGGGTF VRWQHETWSE QNIVQPLKML MANDPDYSFD ILEARHAIEA STAWHAAMRA
TAADKEKIRL CFDATLSEDP DLASQADVRF HLAIAEASHN VVLLQTMRGF FDVLQSSVKQ
SRQRMYLVPP VFSKLTEQHQ AVMDAILDGN AEGARKAMMA HLSFVHTTIK RFDEDQARQA
RITRLPGDHN EMTRENKS
|
|---|
| |