| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3961 |
|---|
| Symbol | selA |
|---|
| ID | 6484450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3845174 |
|---|
| End bp | 3846565 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642739221 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_002042931 |
|---|
| Protein GI | 194445076 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.498417 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.481861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCG AAACGCGTAC ACTCTACAGC CAGCTTCCTG CTATCGATCG CTTATTGCAC
GATAGCGCTT TTCTTTCTCT GCGCGATCGG TATGGCCATA CCCAGGTGGT TGATCTGCTT
AGGCGGATGC TTGACGACGC GCGCGACGTC ATCCGGAATA CGCAAACGCT TCCCGACTGG
TACGCAGACT GGGCGCAAGA GGCGAAACTC CGGCTGGAAA ATGCGGCGCA AAGCGCGCTG
CGCCCGGTGA TTAACCTGAC GGGGACGGTG TTGCACACCA ATCTTGGCCG CGCATTGCAG
GCGCAAGAAG CGGTTGAGGC GGTAACGCAG GCGATGCGCG CGCCGGTGAC GCTGGAATAC
GATTTAGATG GCGCCGGGCG GGGGCATCGC GACCGGGCGC TGGCGACGCT GTTATGCCGA
ATCACCGGGG CGGAGGACGC CTGTATCGTC AATAACAATG CGGCGGCGGT ATTGCTGATG
CTGGCGGCGA CCGCCAGCGG CAAAGAGGTG GTGGTTTCGC GTGGCGAGCT GGTCGAAATC
GGCGGCGCGT TTCGTATTCC GGATGTTATG CGCCAGGCGG GCTGTACGCT GCATGAAGTG
GGCACCACCA ACCGGACGCA CGCGAAAGAT TACCGTCAGG CGGTAAATGA AAATACCGGG
CTGTTGATGA AGGTGCATAC CAGTAATTAC AGCATTGAGG GCTTTACCAA AACGGTAGAG
GAAGCGGAAC TGGCGGAAAT CGGGCGAGAG CTGGATATTC CGGTGGTGGC GGATCTGGGC
AGCGGTTCGC TGGTGGATTT AAGCCAATAT GGCTTACCCA AAGAGCCGAT GCCGCAGCAG
CTCATTGCCG CAGGCGTCAG CCTGGTAAGC TTCTCCGGCG ATAAGTTGTT GGGCGGGCCG
CAGGCCGGGA TCATCGTCGG CAAAAAAGCG ATGATTGCCC AACTGCAAAG CCATCCGCTG
AAACGCGCCC TGCGTGCGGA TAAAATGACG CTGGCGGCGC TGGAGGCAAC GTTACGTCTG
TATCTGCACC CGGAAGCGTT GGCGGAGAAA TTACCCACCC TGCGTCTGTT AACTCGCAGT
GAAGCGTCGA TTCGCGAACA AGCGCAGCGG TTACAGGCGC GGCTGGCGGC ACGTTACGGC
GATGAATTTG CGCTGGAGGT TAAACCCTGC CTGTCGCAAA TCGGCAGCGG TTCATTACCA
GTAGACCGCC TTCCCAGCGC CGCCATGACC TTTACCCCGC ACGACGGGCG CGGTAGTCGG
CTGGAGGCGC TGGCGGCCCG CTGGCGCACG CTGCCTGTAC CGGTCATTGG CCGAATTTAT
GATGGCCGTT TATGGCTGGA TATGCGCTGT CTTGAAGACG AAAGCCGGTT TATGGAGATG
ATGCTGAAAT GA
|
|---|
| Protein sequence | MTSETRTLYS QLPAIDRLLH DSAFLSLRDR YGHTQVVDLL RRMLDDARDV IRNTQTLPDW
YADWAQEAKL RLENAAQSAL RPVINLTGTV LHTNLGRALQ AQEAVEAVTQ AMRAPVTLEY
DLDGAGRGHR DRALATLLCR ITGAEDACIV NNNAAAVLLM LAATASGKEV VVSRGELVEI
GGAFRIPDVM RQAGCTLHEV GTTNRTHAKD YRQAVNENTG LLMKVHTSNY SIEGFTKTVE
EAELAEIGRE LDIPVVADLG SGSLVDLSQY GLPKEPMPQQ LIAAGVSLVS FSGDKLLGGP
QAGIIVGKKA MIAQLQSHPL KRALRADKMT LAALEATLRL YLHPEALAEK LPTLRLLTRS
EASIREQAQR LQARLAARYG DEFALEVKPC LSQIGSGSLP VDRLPSAAMT FTPHDGRGSR
LEALAARWRT LPVPVIGRIY DGRLWLDMRC LEDESRFMEM MLK
|
|---|
| |