Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3955 |
Symbol | sgbE |
ID | 6485324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3836315 |
End bp | 3837010 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642739215 |
Product | L-ribulose-5-phosphate 4-epimerase |
Protein accession | YP_002042925 |
Protein GI | 194445940 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0559727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 0.918987 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAGAGC AACTGAAAGC CGAGGTGCTG GCGGCCAACC TGGCGCTTCC GGCGCACGGG CTGGTCACCT TTACCTGGGG CAACGTCAGC GCGGTCGATG AGACGCGCAA ACTGATGGTC ATCAAGCCTT CCGGCGTTGA ATATGAGGTG ATGACCGCCG ACGATATGGT GGTGGTAGAG ATCGCCAATG GCAAGGTCGT TGAAGGCAAC AAAAAACCGT CGTCCGATAC CGCGACCCAT CTGGCGCTCT ATCGCCGCTA TCCGCAGATC GGCGGGATCG TGCATACCCA TTCCCGCCAT GCGACGATCT GGTCGCAGGC CGGGCTCGAT CTGCCCGCCT GGGGCACCAC CCACGCCGAC TATTTCTATG GCGCGATCCC CTGTACCCGA CTGATGACCG TTGAGGAAAT TAACGACGAG TACGAGTATC AGACCGGCGA GGTGATTATT AAAACCTTTG AAGAGCGCGG TCTCGATCCG GCGCAAATCC CGGCGGTATT AGTTCATTCA CACGGCCCGT TTGCCTGGGG TAAAAATGCC GCCGATGCCG TCCACAACGC CGTGGTGCTT GAGGAGTGCG CCTATATGGG GCTGTTCTCG CGCCAGCTGG CCCCGCAGCT ACCGGATATG CAGCCTGAAT TGCTCGATAA ACACTATCTG CGTAAACATG GCGCGAACGC CTATTACGGG CAGTAA
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Protein sequence | MLEQLKAEVL AANLALPAHG LVTFTWGNVS AVDETRKLMV IKPSGVEYEV MTADDMVVVE IANGKVVEGN KKPSSDTATH LALYRRYPQI GGIVHTHSRH ATIWSQAGLD LPAWGTTHAD YFYGAIPCTR LMTVEEINDE YEYQTGEVII KTFEERGLDP AQIPAVLVHS HGPFAWGKNA ADAVHNAVVL EECAYMGLFS RQLAPQLPDM QPELLDKHYL RKHGANAYYG Q
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