Gene SNSL254_A3951 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3951 
Symbol 
ID6483064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3832323 
End bp3833309 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content50% 
IMG OID642739211 
Producttrap dicarboxylate transporter subunit DctP 
Protein accessionYP_002042921 
Protein GI194445913 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.725737 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTAC ACGTTATTGC TCGTTCATTA TTGATAGCTG GTCTGACGGT TTTCAGCGTG 
TCGTCTCTGG CGGCGCAATC TTTACGTTTT GGTTATGAAA CACCGCAAAC TGACTCCCAA
CATATTGCCG CGAAAAAATT TAACGAATTA TTAAAAGAAA AAACCAACGG CGAATTAACG
CTAAAACTCT TTCCTGACAG CACATTAGGT AACGCCCAGG CAATGATCAG CGGGGTGCGC
GGCGGAACCA TTGATATGGA AATGTCCGGT TCGAACAATT TCACCGGTCT GGCCCCTGTA
TTCAACTTAC TTGATGTCCC CTTCCTGTTT CGCGATACCG CGCATGCGCA TAAAACGCTC
GACGGCAAAG TCGGCGATGA ACTGAAAAAA TCACTCGATT CAAAAGGGTT AAAAGTCCTC
GCCTACTGGG AAAACGGTTG GCGCGACGTC ACCAACTCCC GCGCGCCGGT AAAAACGCCG
GGCGATTTGA AAGGCTTAAA AATCCGCACT AACAACAGCC CAATGAATAT CGCGGCCTTT
AAAATCTTCG GCGCGAACCC TATTCCGATG CCGTTCTCCG AAGTTTATAC CGGCCTCGAA
ACCCGTACGA TTGATGCCCA GGAACACCCT ATCAACGTCG TGTGGTCAGC GAAATTCTAT
GAGGTACAGA AATACCTCTC CCTCACTCAT CACGCCTATT CGCCTCTGCT GCTGGTGATC
AATAAAGCCA AATTCGACGC TTTAAGCCCG CAGTTCCAGG AGGCACTGCT GAGTTCCGCC
AAAGAAGCGG GTGACTATCA GCGCAAACTG GTCGCCGAAG ATCAGCAAAA AATTATCGAT
GGCATGAAAG AAGCCGGAGT TGAAGTCCTG ACCGATATCG ACCGTAAAGC CTTCAGCGAT
GCGCTGGGCA GCCAGGTGCG CGATATGTTC CTGAAAGACA ACCCGCAGGG CGCCGATCTC
CTGAAAGCCG TGGACGAGGT GCAATAA
 
Protein sequence
MKLHVIARSL LIAGLTVFSV SSLAAQSLRF GYETPQTDSQ HIAAKKFNEL LKEKTNGELT 
LKLFPDSTLG NAQAMISGVR GGTIDMEMSG SNNFTGLAPV FNLLDVPFLF RDTAHAHKTL
DGKVGDELKK SLDSKGLKVL AYWENGWRDV TNSRAPVKTP GDLKGLKIRT NNSPMNIAAF
KIFGANPIPM PFSEVYTGLE TRTIDAQEHP INVVWSAKFY EVQKYLSLTH HAYSPLLLVI
NKAKFDALSP QFQEALLSSA KEAGDYQRKL VAEDQQKIID GMKEAGVEVL TDIDRKAFSD
ALGSQVRDMF LKDNPQGADL LKAVDEVQ