| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3950 |
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| Symbol | |
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| ID | 6484608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 3831034 |
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| End bp | 3832311 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642739210 |
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| Product | 2,3-diketo-l-gulonate trap transporter large permease protein yian |
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| Protein accession | YP_002042920 |
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| Protein GI | 194442924 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 0.788142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTGG TGATATTTCT CTGCTGCCTG CTCGGCGGGA TCGCGATAGG TTTACCCATC
GCCTGGTCGC TGCTGCTTTG CGGCGCTGCT CTGATGACAT ACCTGGATAT GTTTGACGTG
CAGATTATGG CGCAAACCCT GGTTAACGGC GCGGACAGTT TCTCCCTACT GGCCATTCCC
TTTTTTGTTT TGGCCGGTGA AATCATGAAC GCGGGCGGCC TGTCAAAGCG AATTGTCGAC
CTGCCGATGA AGCTGGTCGG CCATAAGCCC GGCGGCCTGG GCTACGTGGG CGTTATTGCG
GCAATGATTA TGGCCAGCCT TTCCGGCTCT GCGGTAGCAG ATACCGCTGC GGTCGCCGCG
CTGCTGGTGC CGATGATGCG CTCCGCAAAC TACCCGATCA ACCGCTCCGT TGGGTTAATC
GCTTCCGGCG GGATCATTGC GCCAATTATT CCCCCCTCGA TTCCTTTTAT TATCTTCGGC
GTTTCCAGCG GCTTGTCGAT CAGCAAGCTG TTTATGGCCG GGATCGCACC GGGCATCATG
ATGGGCGCGG CGCTTATGCT CACCTGGTGG TGGCAGGCCG GGCGATTAAA TCTCCCTTCT
CAGCCTAAAG CAACACCGCG TGAAATCTGG CAATCATTGG TTTCAGGTAT CTGGGCGCTG
TTTTTACCGG TGATTATTAT CGGCGGCTTC CGTTCCGGAC TTTTCACGCC AACGGAGGCA
GGGGCGGTTG CCGCGTTTTA CGCCCTCTTT GTCGCCGTGG TTATCTATCG GGAATTAACG
TTTTCCAGTC TCTACCACGT GCTGGTCAAT GCCGCCAAAA CGACGTCAGT CGTCATGTTT
CTGGTGGCCG CGGCTCAGGT ATCCGCCTGG CTGATTACGA TCGCGGAATT ACCCATGATG
GTGTCAGATT TGCTGCAGCC GCTGGTCGAC TCTCCGCGAC TCTTATTTAT CGTCATTATG
ATCTCAATTA TGGTCGTCGG TATGGTGATG GACTTAACGC CAACGGTGTT AATTCTTACC
CCTGTATTAT TGCCATTAGT TAAAGAAGCC AATATTGACC CGATTTATTT CGGCGTCATG
TTCATTATTA ACTGCTCTAT TGGATTAATC ACACCGCCCG TTGGCAACGT CCTCAACGTT
ATTTCTGGGG TAGCAAAATT GAAATTTGAT GACGCGGTAA GAGGCGTATT CCCTTACGTT
GTCGTACTGA TGTCGCTGCT GGTTTTATTT ATTTTTATTC CCGAGCTAAT TATCACACCG
CTTAAATGGA TTAATTAA
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| Protein sequence | MAVVIFLCCL LGGIAIGLPI AWSLLLCGAA LMTYLDMFDV QIMAQTLVNG ADSFSLLAIP
FFVLAGEIMN AGGLSKRIVD LPMKLVGHKP GGLGYVGVIA AMIMASLSGS AVADTAAVAA
LLVPMMRSAN YPINRSVGLI ASGGIIAPII PPSIPFIIFG VSSGLSISKL FMAGIAPGIM
MGAALMLTWW WQAGRLNLPS QPKATPREIW QSLVSGIWAL FLPVIIIGGF RSGLFTPTEA
GAVAAFYALF VAVVIYRELT FSSLYHVLVN AAKTTSVVMF LVAAAQVSAW LITIAELPMM
VSDLLQPLVD SPRLLFIVIM ISIMVVGMVM DLTPTVLILT PVLLPLVKEA NIDPIYFGVM
FIINCSIGLI TPPVGNVLNV ISGVAKLKFD DAVRGVFPYV VVLMSLLVLF IFIPELIITP
LKWIN
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