Gene SNSL254_A3945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3945 
Symbol 
ID6482642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3826959 
End bp3827759 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content53% 
IMG OID642739205 
ProductHTH-type transcriptional regulator YiaJ 
Protein accessionYP_002042915 
Protein GI194443132 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.650339 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA ACAACGATAA AGAGAAGCCT GCGGGGAGTC AGAGCCTGTT TCGTGGCCTG 
ATGTTGATAG AAATTTTGAG TAACTACCCG AACGGTTGCC CGCTGGCGCA CCTGTCGGAG
CTGGCGGGGC TGAACAAGAG TACCGTCCAT CGTTTGTTGC AGGGGCTTCA ATCCTGCGGA
TATGTGACGC CAGCGCCGGC GGCCGGGAGC TACCGTCTGA CGACAAAGTT TATTGCCGTC
GGCCAAAAAG CCCTGTCATC GCTGAATATC ATCCACGTTG CGGCACCGCA CCTTGAGGCG
CTCAACCTGA CCACCGGCGA GACGGTGAAT TTTTCCAGCC GTGAAGATGA CCACGCTATC
CTGATTTATA AGCTGGAACC GACCACCGGT ATGCTGCGCA CGCGTGCCTA CATTGGCCAG
CATATGCCGC TGTACTGCTC GGCGATGGGG AAAATTTATA TGGCGTTTGG TCAGCCGGAT
TATGTGGCGT CTTACTGGGA AAGCCATAAA GAACAGATCC AGCCGCTGAC TCGTAATACC
ATTACCGATT TACCAGCAAT GTACGATGAG CTGGCGCAAA TTCGTGAAAC CAGCATGGCG
ATGGATCGCG AAGAAAATGA ACTGGGCGTT TCCTGTATTG CTGTGCCTGT GTTTGATATT
CACCATCGAG TGCCTTACGC CATTTCTATT TCACTGTCGA CGTCACGGCT AAAACAGATC
GGCGAGAAAA ATCTGCTCAA ACCGTTGCGT GAAACCGCAC AGGCTATCTC TAATGAGCTG
GGATTTACCG TTCGCGAATA A
 
Protein sequence
MSQNNDKEKP AGSQSLFRGL MLIEILSNYP NGCPLAHLSE LAGLNKSTVH RLLQGLQSCG 
YVTPAPAAGS YRLTTKFIAV GQKALSSLNI IHVAAPHLEA LNLTTGETVN FSSREDDHAI
LIYKLEPTTG MLRTRAYIGQ HMPLYCSAMG KIYMAFGQPD YVASYWESHK EQIQPLTRNT
ITDLPAMYDE LAQIRETSMA MDREENELGV SCIAVPVFDI HHRVPYAISI SLSTSRLKQI
GEKNLLKPLR ETAQAISNEL GFTVRE