Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3945 |
Symbol | |
ID | 6482642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3826959 |
End bp | 3827759 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642739205 |
Product | HTH-type transcriptional regulator YiaJ |
Protein accession | YP_002042915 |
Protein GI | 194443132 |
COG category | [K] Transcription |
COG ID | [COG1414] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 0.650339 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAGA ACAACGATAA AGAGAAGCCT GCGGGGAGTC AGAGCCTGTT TCGTGGCCTG ATGTTGATAG AAATTTTGAG TAACTACCCG AACGGTTGCC CGCTGGCGCA CCTGTCGGAG CTGGCGGGGC TGAACAAGAG TACCGTCCAT CGTTTGTTGC AGGGGCTTCA ATCCTGCGGA TATGTGACGC CAGCGCCGGC GGCCGGGAGC TACCGTCTGA CGACAAAGTT TATTGCCGTC GGCCAAAAAG CCCTGTCATC GCTGAATATC ATCCACGTTG CGGCACCGCA CCTTGAGGCG CTCAACCTGA CCACCGGCGA GACGGTGAAT TTTTCCAGCC GTGAAGATGA CCACGCTATC CTGATTTATA AGCTGGAACC GACCACCGGT ATGCTGCGCA CGCGTGCCTA CATTGGCCAG CATATGCCGC TGTACTGCTC GGCGATGGGG AAAATTTATA TGGCGTTTGG TCAGCCGGAT TATGTGGCGT CTTACTGGGA AAGCCATAAA GAACAGATCC AGCCGCTGAC TCGTAATACC ATTACCGATT TACCAGCAAT GTACGATGAG CTGGCGCAAA TTCGTGAAAC CAGCATGGCG ATGGATCGCG AAGAAAATGA ACTGGGCGTT TCCTGTATTG CTGTGCCTGT GTTTGATATT CACCATCGAG TGCCTTACGC CATTTCTATT TCACTGTCGA CGTCACGGCT AAAACAGATC GGCGAGAAAA ATCTGCTCAA ACCGTTGCGT GAAACCGCAC AGGCTATCTC TAATGAGCTG GGATTTACCG TTCGCGAATA A
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Protein sequence | MSQNNDKEKP AGSQSLFRGL MLIEILSNYP NGCPLAHLSE LAGLNKSTVH RLLQGLQSCG YVTPAPAAGS YRLTTKFIAV GQKALSSLNI IHVAAPHLEA LNLTTGETVN FSSREDDHAI LIYKLEPTTG MLRTRAYIGQ HMPLYCSAMG KIYMAFGQPD YVASYWESHK EQIQPLTRNT ITDLPAMYDE LAQIRETSMA MDREENELGV SCIAVPVFDI HHRVPYAISI SLSTSRLKQI GEKNLLKPLR ETAQAISNEL GFTVRE
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