| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3942 |
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| Symbol | malS |
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| ID | 6482297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 3822881 |
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| End bp | 3824908 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642739202 |
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| Product | periplasmic alpha-amylase precursor |
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| Protein accession | YP_002042912 |
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| Protein GI | 194445720 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 0.973795 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTG CCGCCTTCGC TCTGACGCTG ATACCCGGTA TCGCGATCGC CTCATCATGG
ACCTCACCCG GTTTTCCGAC GTTCTCGACG CAGGAAACCG GGCGCTTTAC CAGCCATGCT
GCATTAACAA AAGGTACACG CGCGTTAACG CTCCATATTG ACCAGCAGTG CTGGCAGCCC
TCCGGCGCCA TAAAACTCAA CCAAATGTTG TCGTTAAAAC CCTGCGAAGG CGCGCCACCG
CAATGGCGTT TGTTTAAAGA TGGCGACTAT ACGATAACGG TAGATACCCG CTCCGGTACG
CCGACCCTGT TGTTATCGAT AAAAACTGAA CCTGAGCGCA CCGCGCAGCT CGCCTACCAG
TGTCCCGTCT GGGATGGTTC GCCGCTCACG CTGGATGTTC GCCAGACCTT TCCGGAAGGG
ACGGTAGTGC GCGATTATTA CAGTGGTCAA ACCGATACCG TCCAAAACGG GCAAATCACG
CTGCAACCTG CCGACAGCCA CGGGCTTTTA TTGCTGGAAC GCGCGGAAAC CCATGCGTCA
GCGCCTTTTA ACTGGCGCAA CGCCACCGTT TATTTTGTGC TTACGGATCG CTTTCGCAAT
GGCGATCCAA CCAATGACCA CAGCTATGGT CGCCATAAGG ATGGTATGCA AGAGATTGGC
ACTTTCCACG GCGGCGATTT ACGCGGGTTG ACGAGTCAAC TGGACTATCT ACAGCAATTA
GGCGTGAACG CCTTGTGGAT AAGCTCGCCG TTTGAACAGA TCCACGGCTG GGTCGGCGGC
GGAACAAAAG GCGATTTTCC TCATTACGCC TATCACGGCT ATTACACTCA GGACTGGACG
ACGCTGGATG CCAATATGGG CAGCGAAGCC GATCTCCGCG CGCTGGTCGA CGGCGCGCAC
CAGCGCGGCA TCCGTATTTT ATTTGACGTA GTAATGAATC ATGCCGGTTA CGCCACGCTG
GCGGATATGC AGGAGTATCA GTTCGGCGCG CTCTATTTAT CCGGCGCGGA ACGGCAAAAA
ATTCTCGGCG ATCGCTGGAC AAACTGGCGA CCGGCCACCG GACAAAGCTG GCACAGCTTT
AACGACTACA TCAACTTCAG CGACAGCGCC GCCTGGGAAA AATGGTGGGG GAAAAAGTGG
ATTCGTACCG ATATTGGCGA CTACGACAGT CCGGGATTTG ACGATTTAAC CCTGTCGCTG
GCCTTCCTGC CGGATATAAA AACGGAATCT ACCACGCCTT CCGGTCTACC CGCGTTCTAT
GCCAACAAAC CCGATACTAA AGCAAAGTTC ATTGAAGGCT ATACGCCACG GGATTATCTG
ACTCACTGGT TAAGCCAGTG GGTGCATGAT TACGGCATTG ACGGGTTCCG GGTCGATACT
GCCAAAAACG TTGAGCTTCC TGCCTGGCAA CAGCTAAAAA CCCAGGCCAG CGCGGCGTTA
CGTGAATGGA AGCAGACCAA TCCGGACAAA GCGCTGGATA ATAGCCCGTT CTGGATGACT
GGCGAAGCGT GGGGCCACGG CGTCATGAAA AGTGATTATT ATCGCTATGG TTTCGACGCG
ATGATCAATT TTGATTATCA GGAGCAGGCG GCAAAAGCGG TCGATTGCCT GGCGGAAATG
GGGCCAGTCT GGCAGCAGAT GGCGGATAAA ATGCAGGATT TCAACGTATT AAGTTACCTC
TCCTCGCATG ATACGCGCCT TTTCCGTGAG GGCGGTGATA AGGCGGCGGA ACTGCTGCTG
CTTTCGCCGG GCGCGGTGCA GATCTTTTAC GGCGATGAAT CCGCTCGTCC CTTCGGCCCC
ACCGGCTCCG ACCCGCTGCA AGGCACCCGT TCAGATATGA ACTGGCAGGA CGTGAGCGGA
AAGTCAGCCG CAGCCGTCGC GCACTGGCAG CGTATTAGCC AGTTCCGCGC CAGACATCCC
GCCATCGGCG CAGGCCAACA AACCACGCTG ACGCTAAAAC ACGGGTACGG TTTTGTACGC
CAGTACGGCG ACGATACGGT GATGGTCGTC TGGGCGGGCC GCCGCTAA
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| Protein sequence | MKLAAFALTL IPGIAIASSW TSPGFPTFST QETGRFTSHA ALTKGTRALT LHIDQQCWQP
SGAIKLNQML SLKPCEGAPP QWRLFKDGDY TITVDTRSGT PTLLLSIKTE PERTAQLAYQ
CPVWDGSPLT LDVRQTFPEG TVVRDYYSGQ TDTVQNGQIT LQPADSHGLL LLERAETHAS
APFNWRNATV YFVLTDRFRN GDPTNDHSYG RHKDGMQEIG TFHGGDLRGL TSQLDYLQQL
GVNALWISSP FEQIHGWVGG GTKGDFPHYA YHGYYTQDWT TLDANMGSEA DLRALVDGAH
QRGIRILFDV VMNHAGYATL ADMQEYQFGA LYLSGAERQK ILGDRWTNWR PATGQSWHSF
NDYINFSDSA AWEKWWGKKW IRTDIGDYDS PGFDDLTLSL AFLPDIKTES TTPSGLPAFY
ANKPDTKAKF IEGYTPRDYL THWLSQWVHD YGIDGFRVDT AKNVELPAWQ QLKTQASAAL
REWKQTNPDK ALDNSPFWMT GEAWGHGVMK SDYYRYGFDA MINFDYQEQA AKAVDCLAEM
GPVWQQMADK MQDFNVLSYL SSHDTRLFRE GGDKAAELLL LSPGAVQIFY GDESARPFGP
TGSDPLQGTR SDMNWQDVSG KSAAAVAHWQ RISQFRARHP AIGAGQQTTL TLKHGYGFVR
QYGDDTVMVV WAGRR
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