| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3902 |
|---|
| Symbol | dppF |
|---|
| ID | 6485058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3784883 |
|---|
| End bp | 3785896 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642739164 |
|---|
| Product | dipeptide transporter ATP-binding subunit |
|---|
| Protein accession | YP_002042875 |
|---|
| Protein GI | 194445624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC ATGAGGCCAC CTTGCAACAG CCGCTGTTGC GGGCTATCGA CCTGAAAAAA
CACTATCCGG TGAAGAAGGG GATCTTTTCT CCGGAACGGC TGGTAAAAGC GCTGGATGGC
GTGTCGTTTA ATCTCGAACG CGGTAAAACG CTGGCCGTAG TGGGGGAGTC CGGTTGTGGA
AAATCCACAC TGGGCCGCCT GCTGACGATG ATTGAAACGC CAACCGGCGG CGAGCTTTAT
TACCAGGGGC AGGATCTGCT CAAACACGAT CCGCACGCGC AGAAACTGCG GCGGCAGAAA
ATTCAGATTG TGTTTCAGAA CCCCTACGGT TCCCTGAACC CACGCAAAAA AGTGGGGCAA
ATTCTGGAAG AGCCGTTGCT GATCAATACC AGCCTGAGTA AAGCGCAGCG TCGTGAAAAA
GCGCTGGCGA TGATGGCGAA GGTGGGGCTG AAAACCGAGC ACTACGACCG CTATCCGCAT
ATGTTCTCCG GCGGCCAGCG TCAGCGTATC GCTATCGCCC GCGGTCTGAT GCTTGATCCG
GACGTAGTGA TTGCCGACGA ACCGGTCTCC GCGCTCGACG TGTCGGTGCG TGCCCAGGTG
CTGAACCTGA TGATGGATTT GCAACAGGAT ATGGGGCTGT CTTATGTCTT TATCTCGCAC
GACCTGTCGG TGGTGGAACA CATCGCCGAT GAAGTAATGG TCATGTACTT AGGCCGCTGC
GTGGAGAAAG GGACCAAAGA GCAGATTTTT AACAATCCAC GTCATCCCTA TACCCAGGCG
TTGCTCTCCG CCACGCCACG GCTGAATCCG GACGATCGCC GTGAGCGGAT TAAGCTGACC
GGCGAGTTGC CGAGCCCGCT GAACCCGCCG CCGGGCTGCG CCTTCAACGC CCGCTGCAGC
CGTCGCTTCG GACCCTGTAC GCAGTTACAG CCGCAGCTTA AAGAGTACGA CGGCCAGTTG
GTGGCCTGCT TTGCCGTCGA TCAGGATGAA AACCCGCAGA AACCGTTGAG TTAA
|
|---|
| Protein sequence | MSTHEATLQQ PLLRAIDLKK HYPVKKGIFS PERLVKALDG VSFNLERGKT LAVVGESGCG
KSTLGRLLTM IETPTGGELY YQGQDLLKHD PHAQKLRRQK IQIVFQNPYG SLNPRKKVGQ
ILEEPLLINT SLSKAQRREK ALAMMAKVGL KTEHYDRYPH MFSGGQRQRI AIARGLMLDP
DVVIADEPVS ALDVSVRAQV LNLMMDLQQD MGLSYVFISH DLSVVEHIAD EVMVMYLGRC
VEKGTKEQIF NNPRHPYTQA LLSATPRLNP DDRRERIKLT GELPSPLNPP PGCAFNARCS
RRFGPCTQLQ PQLKEYDGQL VACFAVDQDE NPQKPLS
|
|---|
| |