Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3888 |
Symbol | |
ID | 6484973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3768447 |
End bp | 3771989 |
Gene Length | 3543 bp |
Protein Length | 1180 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642739152 |
Product | cellulose synthase subunit BcsC |
Protein accession | YP_002042863 |
Protein GI | 194444308 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTAAGT TCACGTTAAG TCTCATGCAC GCTTTTTTGC CGGCTGGCGG TCGAAATGCC TTACCTGGCA AAAGGGGCGT TTCTCGGGCA TTGTTGGGGT TATCGCTTGG TATGGCGCTA ACACCGCTTG CCGGCGCAGC GACCTCCGCG CAGCAACAGT TGCTGGAGCA GGTGCGGCTG GGCGAGGCCA CGCACCGTGA GGACTTAGTC CGTCAGTCGC TCTATCGCCT GGAGCTGATC GACCCCAATG ATCCACAGGT TATCGCCGCC CGTTTCCGCT ATCTGTTGCG CCAGGGGGAT AGCGACGGGG CGCAGAAGCT ACTTGATCGG CTGGCGCAAC TGGCGCCGGA GTCGACGGCG TATCAATCTT CCCGCACCGC GATGCTGCTC TCCACGCCGC AAGGACGCCA GTCTTTGCAG GAGGCGCGTT TACTGGCGAC GACCGGCCAT ACTGAACAAG CGATCGCCAG CTACGACAAG CTGTTTAAAG GTTATCCGCC GGAGGGCGAA CTGGCGGTCG AATACTGGAC GACCGTGGCG AAATTGCCCG CTCGCCGTCA CGAAGCGATT AACCAGCTAC AGAAAATCAA TGCCGTCAGT CCGGGTAATA ACGCTCTGCA AAATGCGCTG GCGCAACTGT TGTTCGCCAG CGGGCGGCGC GATGAGGGAT TCGCGGTGCT AAAACAGATG GCGAAATCCA GTACGGGACG CAGCGCGGCC TCCGCCATCT GGTACCAGCA GATAAAAGAT CTCCCGGTGA GCGACGCCAG CGTAAAAGCG TTGCAAGACT ATCTGACGCA GTTTAGCGAA GGCGATAGCC TGTCTGCCGC CCGCGCCCAG CTTAGCGAGC AGCAAAACCA GTTAGCCGAT CCGGCGTTCC GCGCGCGCTC GCAGGGCATC GCGGCGGTTA ATGCCGGAGA AGGCGGTAAG GCCATTGCGC AATTGCAGCA GGCGGTGAGC GCCCGGCAGG ACGACAGCGA GGCGGTCGGC GCGCTGGGGC AGGCATACTC ACAGCGTGGC GATCGCGCCC GCGCCGTCGC GCAGTTTGAA AAGGCGCTGG CGATGGCGCC GCACAGCAGC AGCCGCGATA AGTGGGAGAG TCTGCTGAAG GTCAATCGCT ACTGGCTGTT AATTCAGCAG GGCGACGCGG CCTTAAAAGC GAATAATCTG GCCCAGGCGG AGCGTTTCTA TCAGCAGGCG CGAGCAGTGG ATAACACCGA CAGCTACGCG GTACTGGGGC TGGGGGATGT GGCGATGGCG CGCAAAGATA ATGCCGCCGC CGAACGTTAT TATCAGCAGA CGCTGCGTAT GGATAGCGGT AATACCAATG CTGTACGCGG GCTGGCGAAT CTTTATCGCC AGCAGTCGCC GCAAAAAGCC GCCGCGTTTA TCGCTTCTCT TTCCGCCAGC CAGCGGCGCA GTATCGACGA TATCGAACGC AGTCTGGAAA ATTACCGTCT GGCGCAGCAG GCGGAAACGC TGGAAAGCGA GGGCAAATGG GCGCAGGCCG CAGAACTGCA CCGTCGTCGG CTGGCATTAG ATCCGGGGAG CGTGTGGGTG ACGTACCGAC TGTCACGCGA TCTGTGGCAG GCCGGGCAGC ACGCTCAGGC CGATGCGCAA ATGCGCTCTC TGGCGCAGCA GAAGCCAAAC GATCCGGGAC AGGTCTATGC TTATGGGCTT TATCTTTCCG GCAGCGATCG GGACCGGGCG GCGCTGGCGC ATCTCAATAC CCTGCCGACC AGCCAGTGGA ACAGCAATAT TCAGGAACTG GCGGGCCGAT TGCAAAGTAA CCAGGTGCTG GAAAGCGCTA ACCGCTTGCG CGATAGCGGC AAAGAACGCG AAGCGGAAGC GTTGTTACGT CAGCAGCCGC CCTCTACGCG CATTGCGTTA ACGTTGGCGG ACTGGGCGCA GCAGCGTGGC GATAATGCGG CGGCCCGCGC CGCTTATGAT GCCGTTCTGG CGCGGGAACC GGGTAATGTC GATGCCATGC TGGGGCGGGT AGAAATCGAC ATCGCACAGG GCGATAACGC CGCGGCGCGC GCTCAGCTGG CGGCGCTGCC TGCGTCGCAA ATCACCTCTA TTAACATGCA GCGCCGCGTC GCGCTGGCGC AGCTCCAGCT TGGCGATATC ACGGCGGCGG CGCGGACCTT CAACCGCATT ACGCCGCAGG CAAAAGCACA GCCGCCATCA ATGGAAAGCG CGATGGTATT GCGTGACGCC GCCGCTTTTC AGGCGCAAAC GGGCGAGCCG CAGCGGGCGC TGGAGACCTA CAAAGACGCA ATGGTCGCCG CGGCGATTAC GCCGGTTCGT CCCCAGGATA ACGATACCTT TACCCGCCTG ACGCGCAATG ATGAAAAAGA CGACTGGCTA AAACGCGGCG TGCGTAGCGA TGCGGCGGAG TTGTACCGTC AGCAGGATCT CAATGTCACG TTGGCGCACG ATTATTGGGG GTCGAGCGGG ACTGGCGGTT ACTCCGATCT GAAGGCGCAT ACCACGATGC TTCAGGTGGA TGCGCCCTGG TCGGACGGAC GGGCGTTCTT TCGTACTGAT ATGGTGAATA TGGATGTTGG CCGCTTCTCT ACGGATGCGG ATGGAAAATA CGATAATAAC TGGGGTACCT GTACGCTGGA GAAATGCAGC GGACATCGTA GCCAGGCCGA TACGGGCGCG AGCGTGGCGG TCGGCTGGCA GAATGAGACC TGGCGCTGGG ATATCGGCAC GACGCCGATG GGCTTTAATG TCGTTGATGT GGTTGGCGGC GTCAGCTATA GCGACGATAT CGGGCCGTTG GGTTATACCC TGAACGCGCA TCGTCGCCCG ATCTCCAGCT CGCTGCTGGC GTTTGGCGGG CAAAAGGATG CCAGCAGCAA TACCGGCACC AAATGGGGCG GCGTGCGGGC CAACGGCGGC GGCGTCAGTC TCAGCTATGA TAAAGGCGAA GCAAACGGTG TCTGGGCGTC GCTCAGCGGC GACCAGTTGA GCGGTAAAAA TGTGGAAGAT AACTGGCGCG TGCGCTGGAT GACCGGTTAT TACTATAAGG TGATTAACGA GAATAACCGC CGTGTTACCG TCGGGCTGAA TAACATGATC TGGCATTACG ACAAAGATCT GAGCGGTTAT TCACTGGGTC AGGGCGGTTA TTATAGCCCG CAGGAATACC TGTCGTTTGC GGTGCCGGTG ATGTGGCGGC AGCGTACGGA AAACTGGTCG TGGGAGTTAG GCGGCTCGGT ATCCTGGTCG CACTCCCGCA ACCGTACCAT GCCGCGTTAT CCGCTGATGA ATTTGATTCC GGCGGATTAT CAGGAGGATG CGCGTGACCA GACCAACGGC GGCGGCAGCA GCCAGGGATT TGGCTATACC GCGCGGGCGC TCATTGAACG CCGGGTCACT GCCAACTGGT TTGTGGGTAC GGCTGTCGAT ATTCAGCAGG CGAAAGACTA TACCCCCAGT CATCTGCTGC TGTATGTCCG TTATTCCGCG GCGGGCTGGC AGGGGGATAT GGATTTACCG CCGCAGCCTC TGGTGCCTTA CGCTGACTGG TAA
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Protein sequence | MRKFTLSLMH AFLPAGGRNA LPGKRGVSRA LLGLSLGMAL TPLAGAATSA QQQLLEQVRL GEATHREDLV RQSLYRLELI DPNDPQVIAA RFRYLLRQGD SDGAQKLLDR LAQLAPESTA YQSSRTAMLL STPQGRQSLQ EARLLATTGH TEQAIASYDK LFKGYPPEGE LAVEYWTTVA KLPARRHEAI NQLQKINAVS PGNNALQNAL AQLLFASGRR DEGFAVLKQM AKSSTGRSAA SAIWYQQIKD LPVSDASVKA LQDYLTQFSE GDSLSAARAQ LSEQQNQLAD PAFRARSQGI AAVNAGEGGK AIAQLQQAVS ARQDDSEAVG ALGQAYSQRG DRARAVAQFE KALAMAPHSS SRDKWESLLK VNRYWLLIQQ GDAALKANNL AQAERFYQQA RAVDNTDSYA VLGLGDVAMA RKDNAAAERY YQQTLRMDSG NTNAVRGLAN LYRQQSPQKA AAFIASLSAS QRRSIDDIER SLENYRLAQQ AETLESEGKW AQAAELHRRR LALDPGSVWV TYRLSRDLWQ AGQHAQADAQ MRSLAQQKPN DPGQVYAYGL YLSGSDRDRA ALAHLNTLPT SQWNSNIQEL AGRLQSNQVL ESANRLRDSG KEREAEALLR QQPPSTRIAL TLADWAQQRG DNAAARAAYD AVLAREPGNV DAMLGRVEID IAQGDNAAAR AQLAALPASQ ITSINMQRRV ALAQLQLGDI TAAARTFNRI TPQAKAQPPS MESAMVLRDA AAFQAQTGEP QRALETYKDA MVAAAITPVR PQDNDTFTRL TRNDEKDDWL KRGVRSDAAE LYRQQDLNVT LAHDYWGSSG TGGYSDLKAH TTMLQVDAPW SDGRAFFRTD MVNMDVGRFS TDADGKYDNN WGTCTLEKCS GHRSQADTGA SVAVGWQNET WRWDIGTTPM GFNVVDVVGG VSYSDDIGPL GYTLNAHRRP ISSSLLAFGG QKDASSNTGT KWGGVRANGG GVSLSYDKGE ANGVWASLSG DQLSGKNVED NWRVRWMTGY YYKVINENNR RVTVGLNNMI WHYDKDLSGY SLGQGGYYSP QEYLSFAVPV MWRQRTENWS WELGGSVSWS HSRNRTMPRY PLMNLIPADY QEDARDQTNG GGSSQGFGYT ARALIERRVT ANWFVGTAVD IQQAKDYTPS HLLLYVRYSA AGWQGDMDLP PQPLVPYADW
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