| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3760 |
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| Symbol | hofQ |
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| ID | 6483221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3624494 |
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| End bp | 3625774 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642739027 |
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| Product | outer membrane porin HofQ |
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| Protein accession | YP_002042738 |
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| Protein GI | 194446460 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00726017 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 85 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCCGCC GCAGTGGCGG TGGCTACGTC AGGGAGCGGA CAATGAAGCG ATGGATAGCC
ATAATACTGA TAGCCTTGAT GCCCGCCGCG CAGGCGGGAA AAGCGGCGAA AGTGACGCTG
GTGGTTGACG ACGTCCCTGT GGTGCAGGTT TTGCAGACTT TAGCCGAGCA GGAGCGGCAG
AATCTGGTGG TGTCGCCGGA CGTCAGCGGG ACATTATCGC TACATCTGAC GGATGTGCCG
TGGAAACAGG CGCTACAGAC GGTGGTCAAT AGCGCGGGGC TGGTGCTACG TCAGGAGGGG
AATATTCTCC ATGTTCATTC ACAGGCCTGG CAGAAAGAAC ACAGTGCGCG GCAGGATGCC
GAGCGGTTAA GGCTTCAGGC TAATTTACCG CTGGAAAACC GCAGCATTAG CCTGCAATAC
GCCGATGCCG GCGAACTGGC GAAAGCGGGC GAGAAACTCC TGAGCGCGAA GGGAACCATC
ATGGTAGATA AGCGCACCAA CCGCATGCTG TTGCGCGATA ACCGCGCGGC CCTGGCGGAG
CTGGAAAAAT GGGTATCGCA AATGGATCTG CCGGTGGCGC AGGTGGAACT GGCGGCGCAT
ATCGTCACCA TTAACGAAAA GAGTCTACGG GAACTGGGCG TAAAGTGGAC GCTGGCTGAC
GCGACGCAAG CGGGCGCGGT GGGTGACGTG ACGACGCTTT CCAGTGATTT ATCCGTCGCC
GCCGCCACCT CACGCGTCGG GTTTAACATC GGGCGCATTA ACGGACGCCT GCTGGATTTA
GAGCTGTCAG CGCTGGAACA AAAGCAGCAG TTGGATATTA TCGCCAGCCC CCGGCTGCTG
GCTTCGCATC TACAGCCAGC CAGTATCAAG CAAGGCAGCG AAATTCCTTA TCAGGTTTCC
AGCGGCGAAA GCGGCGCGAC CTCCGTGGAA TTTAAAGAAG CGGTGCTGGG GATGGAGGTG
ACGCCCACCG TTTTGCAAAA AGGGCGCATC CGCCTGAAGT TACATATCAG CCAGAATGTT
CCCGGTCAGG TACTACAACA GGCTGACGGC GAAGTGCTGG CGATAGATAA ACAGGAAATT
GAAACGCAGG TAGAGGTAAA AAGCGGCGAG ACGCTGGCGC TGGGCGGTAT TTTTTCGCGA
AAAAATAAAT CGGGTAGCGA TAGCGTGCCG CTGTTGGGGG ATATTCCCTG GCTTGGTCAG
CTCTTCCGCC ATGACGGTAA AGAGGACGAG CGACGCGAAT TAGTGGTGTT TATCACCCCC
AGACTGGTGG CGACAGAATA A
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| Protein sequence | MRRRSGGGYV RERTMKRWIA IILIALMPAA QAGKAAKVTL VVDDVPVVQV LQTLAEQERQ
NLVVSPDVSG TLSLHLTDVP WKQALQTVVN SAGLVLRQEG NILHVHSQAW QKEHSARQDA
ERLRLQANLP LENRSISLQY ADAGELAKAG EKLLSAKGTI MVDKRTNRML LRDNRAALAE
LEKWVSQMDL PVAQVELAAH IVTINEKSLR ELGVKWTLAD ATQAGAVGDV TTLSSDLSVA
AATSRVGFNI GRINGRLLDL ELSALEQKQQ LDIIASPRLL ASHLQPASIK QGSEIPYQVS
SGESGATSVE FKEAVLGMEV TPTVLQKGRI RLKLHISQNV PGQVLQQADG EVLAIDKQEI
ETQVEVKSGE TLALGGIFSR KNKSGSDSVP LLGDIPWLGQ LFRHDGKEDE RRELVVFITP
RLVATE
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