Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3755 |
Symbol | rpe |
ID | 6485805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3619276 |
End bp | 3619953 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642739022 |
Product | ribulose-phosphate 3-epimerase |
Protein accession | YP_002042733 |
Protein GI | 194443940 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT ATTTGATTGC CCCCTCAATT CTGTCGGCTG ATTTTGCTCG CCTGGGTGAA GACACCGCCA AAGCGCTGGC TGCCGGTGCT GATGTTGTAC ACTTTGACGT CATGGATAAT CACTATGTGC CGAACCTGAC TATCGGCCCG ATGGTGCTGA AATCCCTGCG TCAGTACGGT ATTACCGCGC CTATTGATGT CCACCTGATG GTCAAGCCAG TCGACCGTAT CGTGCCCGAC TTTGCCGCCG CTGGCGCGAG CATCATTACC TTTCACCCGG AAGCCTCCGA ACATGTTGAC CGCACGCTAC AGCTGATTAA AGAACACGGC TGTAAAGCGG GGCTGGTATT CAACCCGGCA ACGCCGCTCA GTTATCTCGA TTACGTCATG GACAAACTGG ATGTGATCCT GCTGATGTCC GTGAACCCAG GCTTCGGCGG CCAGTCTTTT ATTCCGCAGA CGCTGGATAA ACTGCGCGAA GTGCGTCGCC GCATTGATGC GTCCGGTTAC GACATTCGCC TGGAAGTGGA CGGCGGCGTG AAGGTGAACA ATATCGGCGA GATCGCCGCA GCAGGTGCGG ACATGTTTGT TGCGGGGTCG GCAATTTTCG ATAAACCCGA CTACAAAAAA GTAATTGATG AAATGCGCAG TGAGCTGGCA AAGGTAACTC ATGGATAA
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Protein sequence | MKQYLIAPSI LSADFARLGE DTAKALAAGA DVVHFDVMDN HYVPNLTIGP MVLKSLRQYG ITAPIDVHLM VKPVDRIVPD FAAAGASIIT FHPEASEHVD RTLQLIKEHG CKAGLVFNPA TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPQTLDKLRE VRRRIDASGY DIRLEVDGGV KVNNIGEIAA AGADMFVAGS AIFDKPDYKK VIDEMRSELA KVTHG
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