| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3748 |
|---|
| Symbol | nirC |
|---|
| ID | 6482819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3608663 |
|---|
| End bp | 3609472 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642739017 |
|---|
| Product | nitrite transporter NirC |
|---|
| Protein accession | YP_002042728 |
|---|
| Protein GI | 194443284 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2116] Formate/nitrite family of transporters |
|---|
| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.631767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.373246 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACAG ACACTATCAA TAAGTGTGCG GCTAACGCTG CGCGCATCGC ACGCCTGTCG
GCGAATAATC CGCTCGGCTT CTGGGTCAGT TCGGCAATGG CCGGGGCTTA TGTCGGTCTC
GGCATCATTC TTATTTTCAC CCTCGGCAAT CTGCTCGACC CGTCCGTACG TCCTCTGGTG
ATGGGAGCCA CCTTCGGTAT CGCCTTAACG CTGGTCATCA TCGCCGGTTC CGAACTGTTT
ACCGGCCACA CCATGTTCCT GACGCTGGGC GTCAAAGCAG GCACTATCAG CCACGGTCAA
ATGTGGGCTA TCCTGCCGCA AACCTGGCTC GGCAACCTGG TCGGTTCCGT GTTTGTCGCC
CTGCTTTACA GCTGGGGCGG CGGCAGTTTG TTGCCGGTCG ATACCAGCAT CGTTCACTCA
GTCGCGCTGG CGAAAACCAC CGCGCCCGCC ACGGTACTGT TCTTCAAAGG CGCGCTGTGT
AACTGGCTGG TTTGTCTGGC AATCTGGATG GCAATCCGCA CCGAAGGCAC GGCAAAATTT
CTTGCTATCT GGTGGTGTCT GCTGGCGTTT ATCGCTTCCG GCTACGAGCA CTCCGTCGCG
AATATGACGC TGTTCGCCCT CTCCTGGTTT GGTCATCACA GCGACGCCTA TACCCTGGCC
GGAATTGGTC ATAACCTGTT GTGGGTGACA CTCGGTAATA CTTTGTCCGG TGTCGTATTC
ATGGGATTGG GTTATTGGTA TGCTACGCCA AAATCGGAGC GTCCGGCTCC GGCAAAAATC
AATCAGCCAG AGGCTGCTGC CAATAATTAA
|
|---|
| Protein sequence | MFTDTINKCA ANAARIARLS ANNPLGFWVS SAMAGAYVGL GIILIFTLGN LLDPSVRPLV
MGATFGIALT LVIIAGSELF TGHTMFLTLG VKAGTISHGQ MWAILPQTWL GNLVGSVFVA
LLYSWGGGSL LPVDTSIVHS VALAKTTAPA TVLFFKGALC NWLVCLAIWM AIRTEGTAKF
LAIWWCLLAF IASGYEHSVA NMTLFALSWF GHHSDAYTLA GIGHNLLWVT LGNTLSGVVF
MGLGYWYATP KSERPAPAKI NQPEAAANN
|
|---|
| |