| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3746 |
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| Symbol | nirD |
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| ID | 6483456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 3608072 |
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| End bp | 3608398 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642739015 |
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| Product | nitrite reductase small subunit |
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| Protein accession | YP_002042726 |
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| Protein GI | 194443633 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.559865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.253474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGT GGCAAAACAT CTGCAAAATC GATGACATCC TGCCGGGAAC CGGCGTCTGC
GCGCTGTCAG GCGGCGAGCA GGTGGCAATT TTCCGTCCTT ACCATAGCGA TCAGGTGTTT
GCGATCAGCA ACATCGACCC GTTCTTTGAG GCCAGTGTGC TGTCTCGTGG GCTGATTGCG
GAACACCAGG GCGAACTGTG GGTCGCCAGC CCGTTGAAAA AGCAGCGCTT CCGCCTGAGC
GATGGTTTAT GCATGGAAGA TGAGCAGTTT TCTGTGAAAC ATTACGACGC GCGGGTGAAA
GACGGCGTGG TGCAGTTGCG CGGTTAA
|
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| Protein sequence | MSQWQNICKI DDILPGTGVC ALSGGEQVAI FRPYHSDQVF AISNIDPFFE ASVLSRGLIA
EHQGELWVAS PLKKQRFRLS DGLCMEDEQF SVKHYDARVK DGVVQLRG
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