| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3709 |
|---|
| Symbol | rplC |
|---|
| ID | 6485883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3577574 |
|---|
| End bp | 3578203 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642738979 |
|---|
| Product | 50S ribosomal protein L3 |
|---|
| Protein accession | YP_002042690 |
|---|
| Protein GI | 194445166 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000323926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.640658 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGTT TAGTCGGTAA AAAAGTGGGT ATGACCCGCA TCTTCACTGA AGATGGCGTC
TCTATCCCAG TAACCGTAAT CGAAGTTGAA GCAAACCGTG TTACTCAGGT TAAAGACCTG
GCTAACGATG GCTACCGCGC TGTTCAGGTT ACTACGGGTG CTAAAAAAGC TAACCGTGTC
ACCAAGCCGG AAGCGGGTCA CTTTGCTAAA GCTGGCGTAG AAGCTGGCCG TGGTCTGTGG
GAATTCCGTC TGGCTGAAGG CGAAGAATAC ACCGTAGGTC AGAGCATCAG CGTTGAACTG
TTTGCTGACG TTAAAAAAGT TGACGTAACC GGTACCTCTA AAGGTAAAGG TTTCGCTGGT
ACCGTTAAGC GCTGGAACTT CCGTACCCAG GACGCTACTC ACGGTAACTC CTTGTCTCAC
CGCGTTCCGG GTTCTATCGG TCAGAACCAG ACTCCGGGCA AAGTGTTCAA AGGCAAGAAA
ATGGCAGGTC AGATGGGTAA TGAGCGCGTA ACCGTTCAGA GCCTTGACGT AGTACGCGTT
GACGCTGAGC GCAACCTGCT GCTGGTTAAG GGTGGTGTTC CGGGTGCAAC CGGTTGCGAC
CTGATCGTTA AACCAGCTGT GAAGGCGTAA
|
|---|
| Protein sequence | MIGLVGKKVG MTRIFTEDGV SIPVTVIEVE ANRVTQVKDL ANDGYRAVQV TTGAKKANRV
TKPEAGHFAK AGVEAGRGLW EFRLAEGEEY TVGQSISVEL FADVKKVDVT GTSKGKGFAG
TVKRWNFRTQ DATHGNSLSH RVPGSIGQNQ TPGKVFKGKK MAGQMGNERV TVQSLDVVRV
DAERNLLLVK GGVPGATGCD LIVKPAVKA
|
|---|
| |