Gene SNSL254_A3683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3683 
SymbolrpoA 
ID6484432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3565318 
End bp3566307 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content52% 
IMG OID642738955 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_002042666 
Protein GI194442652 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.903884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones95 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTGACAGA GTTTCTAAAA CCGCGCCTGG TAGATATCGA GCAAGTGAGT 
TCGACGCACG CCAAGGTGAC CCTTGAGCCT TTAGAGCGTG GCTTCGGCCA TACTCTGGGT
AACGCACTGC GCCGTATTCT GCTCTCATCG ATGCCGGGTT GCGCGGTGAC CGAGGTTGAG
ATTGATGGTG TACTACATGA GTACAGCACC AAAGAAGGCG TTCAGGAAGA CATCCTGGAA
ATCCTGCTCA ACCTGAAAGG GCTGGCGGTG AGAGTTCAGG GTAAAGATGA AGTTATTCTT
ACCCTGAATA AATCTGGCAT TGGCCCTGTG ACTGCAGCCG ATATCACCCA TGATGGGGAT
GTCGAAATCG TCAAGCCGCA GCACGTGATC TGCCACCTGA CCGATGAAAA CGCGTCTATT
AGTATGCGTA TCAAAGTTCA GCGCGGTCGT GGTTATGTGC CGGCTTCTAC CCGAATTCAT
TCGGAAGAAG ATGAGCGCCC AATCGGCCGT CTGCTGGTCG ACGCCTGCTA CAGCCCTGTA
GAGCGTATTG CCTACAATGT TGAAGCAGCG CGTGTAGAAC AGCGTACCGA CCTGGACAAG
CTGGTCATCG AAATGGAAAC CAACGGCACA ATCGATCCTG AAGAGGCGAT TCGTCGTGCG
GCAACCATCC TGGCTGAACA ACTGGAAGCT TTCGTTGATT TACGTGATGT ACGTCAACCG
GAAGTGAAAG AAGAGAAACC AGAATTCGAT CCGATCCTGC TGCGCCCTGT TGACGATCTG
GAATTGACTG TCCGCTCTGC TAACTGCCTC AAGGCAGAAG CTATCCACTA TATCGGTGAT
CTGGTACAGC GTACCGAGGT TGAGCTTCTT AAGACGCCTA ACCTGGGTAA AAAATCTCTT
ACCGAGATTA AAGACGTGCT GGCTTCCCGT GGACTGTCTC TGGGTATGCG CCTGGAAAAC
TGGCCACCGG CAAGCATCGC TGACGAGTAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD
VEIVKPQHVI CHLTDENASI SMRIKVQRGR GYVPASTRIH SEEDERPIGR LLVDACYSPV
ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP
EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL
TEIKDVLASR GLSLGMRLEN WPPASIADE