Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3656 |
Symbol | |
ID | 6486496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3544314 |
End bp | 3547427 |
Gene Length | 3114 bp |
Protein Length | 1037 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642738931 |
Product | AcrB protein |
Protein accession | YP_002042648 |
Protein GI | 194443851 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.29676 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.452707 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACT TTTTTATTAG ACGTCCTATT TTCGCCTGGG TTCTGGCCAT TATCCTGATG ATGGCTGGCG CACTGGCAAT AATGCAACTT CCCGTTGCGC AGTATCCAAC CATTGCGCCG CCAGCGGTTT CTATTTCTGC AACCTATCCT GGCGCGGATG CGCAGACGGT ACAGGATACG GTTACTCAGG TTATCGAACA AAATATGAAC GGTATCGATA ACCTGATGTA TATGTCCTCT ACCAGCGACT CTGCTGGTAG CGTGACCATC ACCCTGACCT TCCAGTCCGG AACCGATCCG GATATCGCGC AGGTTCAGGT GCAAAATAAA TTGCAGCTCG CCACGCCTTT ACTGCCGCAA GAAGTCCAGC AGCAGGGGAT TAGCGTTGAA AAATCCAGCA GCAGCTTTTT GATGGTCGCC GGGTTCGTCT CAGATAATCC GAACACTACC CAGGACGACA TCTCTGACTA TGTCGCCTCT AACATTAAGG ATTCTATCAG CCGTCTGAAT GGTGTGGGCG ACGTTCAGCT ATTTGGCGCA CAGTACGCCA TGCGTATCTG GCTGGATGCG AATCTGCTAA ATAAATACCA GCTCACGCCA GTTGACGTCA TCAACCAGTT AAAAGTACAG AACGACCAGA TTGCGGCAGG CCAACTGGGC GGCACGCCAG CATTACCGGG CCAGCAGCTT AACGCCTCAA TCATCGCCCA AACGCGTCTG AAAGATCCGG AAGAGTTCGG CAAAGTTACG TTGCGCGTCA ATACCGACGG CTCTGTCGTC CATCTCAAAG ATGTCGCGCG TATTGAGCTT GGCGGTGAAA ACTATAACGT TGTAGCGCGC ATTAACGGTA AACCGGCCTC CGGTCTCGGT ATTAAACTGG CGACCGGCGC TAACGCGCTG GATACCGCAA CCGCAATCAA AGCGAAACTG GCGGAGCTGC AGCCTTTCTT CCCCCAGGGA ATGAAGGTGG TTTATCCTTA TGACACAACG CCCTTCGTAA AAATATCTAT CCACGAAGTG GTAAAAACGC TGTTTGAAGC GATTATTCTG GTGTTCCTGG TAATGTATCT GTTCTTACAG AATATCCGGG CAACCCTGAT TCCTACCATC GCTGTTCCTG TCGTGTTGCT AGGCACTTTT GCGGTACTCG CCGCCTTTGG CTATTCCATC AATACCCTGA CGATGTTCGG CATGGTACTG GCGATAGGGC TGTTGGTTGA CGATGCGATA GTGGTCGTAG AAAACGTTGA ACGTGTAATG ATGGAGGATA ACCTTCCTCC CCGAGAGGCG ACGGAAAAAT CCATGTCGCA GATTCAGGGA GCGCTGGTTG GTATCGCGAT GGTACTGTCT GCGGTATTTA TCCCGATGGC CTTTTTTGGC GGCTCGACCG GGGCAATTTA TCGCCAGTTC TCTATTACTA TTGTTTCAGC AATGGCGCTA TCCGTTCTGG TTGCGTTGAT TCTGACGCCA GCACTGTGCG CTACGCTGCT TAAACCCGTA TCTGCTGAAC ATCACGAGAA AAAAAGCGGC TTCTTTGGCT GGTTCAATAC CAGGTTTGAC CACAGCGTTA ACCACTATAC TAACAGCGTA AGCGGCATCG TGCGTAATAC GGGTCGCTAT CTCATTATCT ATCTACTTAT TGTAGTCGGA ATGGCGGTTC TGTTTTTACG CCTCCCGACC TCCTTCCTGC CGGAAGAAGA TCAGGGGGTA TTCCTGACCA TGATTCAGCT CCCCTCTGGC GCTACGCAAG AACGTACGCA GAAAGTGCTG GATCAAGTCA CTCATTACTA CCTGAATAAT GAAAAAGCGA ACGTCGAAAG CGTGTTTACC GTAAACGGCT TTAGCTTTAG CGGTCAGGGA CAAAACTCAG GGATGGCATT TGTCAGCCTT AAACCCTGGG AAGAGCGTAA CGGTGAAGAA AATAGCGTCG AAGCCGTTAT CGCCAGAGCG ACACGCGCCT TCAGCCAGAT TCGCGACGGG TTGGTGTTCC CCTTCAACAT GCCAGCAATT GTCGAGTTAG GTACCGCGAC AGGTTTCGAC TTTGAACTGA TTGATCAGGG AGGACTCGGT CACGATGCGT TAACAAAAGC GCGTAATCAA CTCCTGGGTA TGGTCGCGAA GCATCCTGAC CTATTAGTGC GCGTACGCCC GAACGGGCTG GAAGACACGC CACAGTTCAA GCTGGATGTC GATCAAGAAA AAGCGCAGGC GCTCGGTGTT TCGCTGTCTG ATATCAACGA AACCATCTCC GCGGCGTTGG GCGGCTATTA CGTTAACGAC TTTATCGATC GCGGACGAGT GAAAAAAGTA TACGTTCAGG CTGACGCTCA GTTCCGTATG CTGCCGGGAG ATATCAACAA TCTTTATGTA CGCAGCGCCA ATGGCGAGAT GGTGCCCTTC TCTACCTTTA GCTCAGCACG GTGGATTTAT GGTTCGCCAC GCCTGGAACG CTATAACGGG ATGCCGTCAA TGGAACTGCT CGGTGAAGCA GCGCACGGAC GAAGTACCGG TGAAGCCATG TCGTTAATGG AAAACCTGGC TTCACAGCTG CCAAACGGTA TTGGCTATGA CTGGACAGGT ATGTCGTATC AGGAACGGTT GTCAGGTAAC CAGGCGCCGG CGCTGTACGC AATCTCACTC ATTGTCGTTT TCCTCTGCCT TGCCGCTCTG TATGAAAGCT GGTCAATTCC GTTCTCGGTA ATGCTGGTCG TACCGCTCGG CGTGGTTGGC GCTCTGCTTG CAGCGTCATT GCGCGGTCTG AACAATGACG TTTACTTCCA GGTTGGCTTG TTAACCACTA TTGGCCTTTC TGCTAAAAAC GCCATCCTGA TTGTTGAGTT CGCCAAAGAT CTCATGGAAA AAGAAGGACG TGGATTGATT GAAGCGACGC TGGAAGCATC CCGTATGCGT TTACGTCCTA TTCTAATGAC CTCGCTGGCC TTTATTCTCG GGGTAATGCC GTTAGTTATC AGTCGTGGCG CAGGTAGTGG GGCACAGAAC GCAGTAGGCA CAGGGGTTAT GGGGGGAATG TTAACCGCAA CCTTATTAGC TATCTTCTTC GTGCCAGTAT TCTTCGTTGT TGTAAAACGC CGATTTAATC GCCATCATGA TTAA
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Protein sequence | MANFFIRRPI FAWVLAIILM MAGALAIMQL PVAQYPTIAP PAVSISATYP GADAQTVQDT VTQVIEQNMN GIDNLMYMSS TSDSAGSVTI TLTFQSGTDP DIAQVQVQNK LQLATPLLPQ EVQQQGISVE KSSSSFLMVA GFVSDNPNTT QDDISDYVAS NIKDSISRLN GVGDVQLFGA QYAMRIWLDA NLLNKYQLTP VDVINQLKVQ NDQIAAGQLG GTPALPGQQL NASIIAQTRL KDPEEFGKVT LRVNTDGSVV HLKDVARIEL GGENYNVVAR INGKPASGLG IKLATGANAL DTATAIKAKL AELQPFFPQG MKVVYPYDTT PFVKISIHEV VKTLFEAIIL VFLVMYLFLQ NIRATLIPTI AVPVVLLGTF AVLAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM MEDNLPPREA TEKSMSQIQG ALVGIAMVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMAL SVLVALILTP ALCATLLKPV SAEHHEKKSG FFGWFNTRFD HSVNHYTNSV SGIVRNTGRY LIIYLLIVVG MAVLFLRLPT SFLPEEDQGV FLTMIQLPSG ATQERTQKVL DQVTHYYLNN EKANVESVFT VNGFSFSGQG QNSGMAFVSL KPWEERNGEE NSVEAVIARA TRAFSQIRDG LVFPFNMPAI VELGTATGFD FELIDQGGLG HDALTKARNQ LLGMVAKHPD LLVRVRPNGL EDTPQFKLDV DQEKAQALGV SLSDINETIS AALGGYYVND FIDRGRVKKV YVQADAQFRM LPGDINNLYV RSANGEMVPF STFSSARWIY GSPRLERYNG MPSMELLGEA AHGRSTGEAM SLMENLASQL PNGIGYDWTG MSYQERLSGN QAPALYAISL IVVFLCLAAL YESWSIPFSV MLVVPLGVVG ALLAASLRGL NNDVYFQVGL LTTIGLSAKN AILIVEFAKD LMEKEGRGLI EATLEASRMR LRPILMTSLA FILGVMPLVI SRGAGSGAQN AVGTGVMGGM LTATLLAIFF VPVFFVVVKR RFNRHHD
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