| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3631 |
|---|
| Symbol | tldD |
|---|
| ID | 6482241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3516391 |
|---|
| End bp | 3517836 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642738906 |
|---|
| Product | protease TldD |
|---|
| Protein accession | YP_002042623 |
|---|
| Protein GI | 194445200 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.0205399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGA ACCTGGTAAG TGAACAATTG CTAGCGGCGA ATGGCCTGAA CCATCAGGAT
CTGTTCGCTA TTTTGGGCCA ACTGGCCGAA CGCCGTCTTG ATTATGGCGA CCTCTATTTT
CAGTCGAGCT ATCACGAATC CTGGGTTTTA GAAGACCGCA TCATTAAAGA TGGTTCATAT
AATATCGACC AGGGCGTTGG CGTTCGCGCC ATTAGCGGCG AAAAAACCGG TTTTGCTTAT
GCTGACCAGA TAAGCCTCCT GGCGCTGGAG CAGAGTGCGC AGGCAGCGCG AACCATTGTA
CGCGAGAACG GCGAAGGCAA GGTAAAAACG CTCGCCGCCG TAGCGCATCA GCCGCTCTAC
ACCACCCTTG ATCCGCTGCA AAGTATGAGC CGCGAAGAGA AGCTGGATAT CCTCAGACGC
GTTGACAAAG TGGCGCGAGA AGCCGATAAA CGCGTGCAGG AAGTTAACGC CAGCCTGACC
GGCGTATATG AATTAATCCT CGTGGCGGCG ACCGACGGGA CGCTGGCGGC GGATGTCCGT
CCACTGGTGC GGTTGTCCGT TAGCGTGCAG GTGGAAGAAG ACGGTAAACG CGAGCGCGGC
GCCAGCGGCG GCGGCGGTCG CTTTGGTTAT GAGTATTTTC TTGCCGATCT CGACGGCGAG
GTGCGCGCCG ACGCGTGGGC GAAAGAAGCG GTACGCATGG CGCTGGTTAA TCTCTCCGCG
GTCGCTGCGC CAGCGGGGAC GTTACCGGTG GTTCTGGGCG CCGGGTGGCC GGGCGTATTG
CTGCACGAAG CGGTCGGTCA CGGGCTGGAA GGTGATTTCA ACCGTCGTGG GACGTCTGTG
TTTAGCGGTC AGATCGGTGA GCAGGTTGCC TCCGCGCTTT GCACCGTAGT GGATGACGGC
ACAATGATGA ACCGTCGCGG CTCCGTTGCT ATCGATGATG AAGGTACGCC AGGCCAGTAC
AACGTATTGA TTGAAAATGG CGTACTGAAA GGATACATGC AGGACAAGCT GAACGCGCGC
CTGATGGGCG CTGCGCCGAC CGGTAACGGG CGTCGCGAAT CTTATGCGCA TCTGCCGATG
CCGCGTATGA CGAATACCTA TATGTTGGCG GGGCAGTCAA CGCCGCAGGA AATTATCGAA
TCCGTTGAGT ACGGCATCTA TGCGCCTAAC TTTGGCGGCG GTCAGGTGGA TATCACCTCC
GGCAAGTTTG TGTTCTCTAC CTCGGAAGCG TATCTGATTG AAAACGGCAA AGTCACGACG
CCGGTGAAGG GCGCGACGTT GATTGGATCA GGCATTGAAA CAATGCAACA GATCTCCATG
GTCGGCAATG ACCTTAAGCT GGATAACGGG GTGGGGGTTT GCGGTAAAGA GGGGCAAAGT
CTGCCGGTAG GCGTAGGCCA GCCGACGCTG AAAGTCGATA ACCTGACGGT TGGCGGCACC
GCATAA
|
|---|
| Protein sequence | MSLNLVSEQL LAANGLNHQD LFAILGQLAE RRLDYGDLYF QSSYHESWVL EDRIIKDGSY
NIDQGVGVRA ISGEKTGFAY ADQISLLALE QSAQAARTIV RENGEGKVKT LAAVAHQPLY
TTLDPLQSMS REEKLDILRR VDKVAREADK RVQEVNASLT GVYELILVAA TDGTLAADVR
PLVRLSVSVQ VEEDGKRERG ASGGGGRFGY EYFLADLDGE VRADAWAKEA VRMALVNLSA
VAAPAGTLPV VLGAGWPGVL LHEAVGHGLE GDFNRRGTSV FSGQIGEQVA SALCTVVDDG
TMMNRRGSVA IDDEGTPGQY NVLIENGVLK GYMQDKLNAR LMGAAPTGNG RRESYAHLPM
PRMTNTYMLA GQSTPQEIIE SVEYGIYAPN FGGGQVDITS GKFVFSTSEA YLIENGKVTT
PVKGATLIGS GIETMQQISM VGNDLKLDNG VGVCGKEGQS LPVGVGQPTL KVDNLTVGGT
A
|
|---|
| |