Gene SNSL254_A3621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3621 
Symbol 
ID6486133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3507967 
End bp3508596 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content49% 
IMG OID642738896 
Productputative GntR family transcriptional regulator 
Protein accessionYP_002042613 
Protein GI194445519 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.355756 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.900731 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGA TCCAAAGAAC GCAAACCCGC GATCACATTA CGCAAATGCT TCGCTATGAA 
ATTCTTTCCG GCAATATAAA AGCGGGAGAA GAACTCGCGC AGGAAAGTAT TGCGGAGCAG 
CTCGGTCTTT CACGAATGCC GGTTCGAGAA GCGCTACAGT CACTCGAACA GGAAGGTTTT 
TTAATCCGAC TGCCCAACAG GCACATGCAG GTCGCGCATC TTGAGGCCGA TCGCGTGAGT 
CATATTTTTC GCGTGATTGC CGCGATGGCC GCCGAAATGT TTTCGCTGAT ACCCAGCGAA 
GTAGGCGATG CCCTCCTGAT ACGTGCGCAA GCGCTGGCTG TCGCAGAAGA CAAATCCTGC 
GAGCTGGAGT GTCATGCGAT GCTGATTTCT TATGTGAATA ACCGCTATCT GGAAAAGGTG 
TATCAGCAGT TCCTGGACGG TTATGTCTCT TATGTTATTT TGCATCTGAA AAAAGATAAT 
CAGGAGTCGG CGCAGCTTTT CGCTGAACTG GCTGACGTCA TACGCCAGGG GCGGCGTGAT 
GAGATTGGGC AAGTTATGCA GCGTTATTTC CTCTCTTTAG CAGAAATAAT GCGTCAACAT 
ATGAAGGATT GGGAAAGTGC AGAAGCCTAA
 
Protein sequence
MKKIQRTQTR DHITQMLRYE ILSGNIKAGE ELAQESIAEQ LGLSRMPVRE ALQSLEQEGF 
LIRLPNRHMQ VAHLEADRVS HIFRVIAAMA AEMFSLIPSE VGDALLIRAQ ALAVAEDKSC 
ELECHAMLIS YVNNRYLEKV YQQFLDGYVS YVILHLKKDN QESAQLFAEL ADVIRQGRRD 
EIGQVMQRYF LSLAEIMRQH MKDWESAEA