| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3596 |
|---|
| Symbol | codB |
|---|
| ID | 6486360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3483896 |
|---|
| End bp | 3485149 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738872 |
|---|
| Product | cytosine permease |
|---|
| Protein accession | YP_002042589 |
|---|
| Protein GI | 194444420 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGCAGG ACAACAATTA TAGCCAGGGC CCCGTCCCTC TGGCGGCGCG GAAGGGCGTG
ATTCCACTGA CGTTTGTCAT GTTGGGTTTA ACGTTTTTTT CCGCCAGTAT GTGGACCGGA
GGGACACTCG GCACCGGTCT TTCTTATAAT GATTTCTTCC TCGCAGTTCT CTTCGGTAAT
CTCCTCCTCG GTATCTACAC TGCATTTCTT GGTTACATCG GCGCAAAAAC CGGACTCTCC
ACTCACCTCC TTGCACGTTA CTCCTTTGGC GTTAAAGGCT CATGGCTTCC CTCGCTACTG
CTAGGCGGTA CTCAAGTGGG CTGGTTTGGC GTTGGCGTAG CGATGTTCGC TATTCCGGTC
AGTAAAGCGA CGGGCATTGA TGCCAATATC CTGATTGCCG TTTCGGGTCT ACTGATGACC
CTGACCATTT TTTTCGGCAT CTCGGCGCTG ACCATTTTGT CTATCGTTGC CGTACCCGCG
ATCGTTATTC TGGGCAGCTA CTCCGTCTGG CTGGCGGTCA GCGGCGTGGG TGGGCTGGAG
CATTTAAAAA CGATAGTGCC GCAGACGCCG CTGGATTTTT CCAGCGCGCT GGCGCTGGTG
GTGGGCTCGT TTGTCAGCGC CGGTACATTG ACCGCCGACT TCGTCCGCTT CGGGCGTCAT
GCCAAAAGCG CCGTACTGAT TGCGATGGTC GCTTTTTTCC TCGGCAACTC GCTGATGTTT
ATCTTTGGCG CGGCAGGCGC TGCCGCCGTC GGTCAGGCGG ATATCTCTGA CGTGATGATA
GCGCAGGGGC TGCTGCTGCC CGCGATTGTG GTGCTTGGCC TGAATATCTG GACCACCAAC
GATAACGCGC TGTACGCATC GGGTCTGGGC TTCGCCAATA TTACCGGTCT TTCCAGCCGT
ACGCTGTCGG TGGTGAACGG GATTATCGGT ACCGTGTGCG CGCTGTGGCT TTACAATAAT
TTTGTCGGCT GGCTGACGTT CCTGTCATCT GCCATCCCAC CGATTGGCGG AGTGATTATT
GCCGACTATC TGTTGAACCG TCGCCGCTAT GCCGACTTCA ACACCGTGCG CTTTATTCCC
GTTAACTGGA TTGCTATTCT TTCCGTCGCG CTGGGCATCG CCGCCGGACA TTATGTTCCT
GGTATTGTGC CCGTCAACGC CGTACTCGGC GGCGTCTTCA GCTATATCCT GCTGAATCCA
CTTTTCAACC GCAGCCTTGC TAAATCACCA GAGGTCAGCC ATGCAGAACA ATAA
|
|---|
| Protein sequence | MSQDNNYSQG PVPLAARKGV IPLTFVMLGL TFFSASMWTG GTLGTGLSYN DFFLAVLFGN
LLLGIYTAFL GYIGAKTGLS THLLARYSFG VKGSWLPSLL LGGTQVGWFG VGVAMFAIPV
SKATGIDANI LIAVSGLLMT LTIFFGISAL TILSIVAVPA IVILGSYSVW LAVSGVGGLE
HLKTIVPQTP LDFSSALALV VGSFVSAGTL TADFVRFGRH AKSAVLIAMV AFFLGNSLMF
IFGAAGAAAV GQADISDVMI AQGLLLPAIV VLGLNIWTTN DNALYASGLG FANITGLSSR
TLSVVNGIIG TVCALWLYNN FVGWLTFLSS AIPPIGGVII ADYLLNRRRY ADFNTVRFIP
VNWIAILSVA LGIAAGHYVP GIVPVNAVLG GVFSYILLNP LFNRSLAKSP EVSHAEQ
|
|---|
| |