| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3576 |
|---|
| Symbol | kdsD |
|---|
| ID | 6485742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3463021 |
|---|
| End bp | 3464007 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738856 |
|---|
| Product | D-arabinose 5-phosphate isomerase |
|---|
| Protein accession | YP_002042573 |
|---|
| Protein GI | 194446312 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCATT TAGCGTTGCA ACCGGGGTTT GACTTTCAGC AGGCAGGCAA AGAGGTCCTG
GAAATTGAAC GTGAAGGCCT GGCGGAGCTT GATCAATATA TCAACCAGCA TTTCACGCTG
GCCTGTGAAA AAATGTTCAA CTGCACCGGA AAAGTGGTGG TCATGGGGAT GGGAAAATCC
GGTCATATCG GACGGAAAAT GGCCGCCACG TTCGCCAGTA CCGGCACCTC TTCCTTTTTT
GTACATCCGG GCGAAGCCGC GCACGGCGAT TTGGGGATGG TTACGCCGCA GGATGTGGTT
ATCGCTATCT CCAACTCCGG CGAATCCAGC GAGATCGCGG CGCTAATACC GGTACTTAAA
CGTCTGCACG TGCCGTTAAT TTGCATTACC GGGCGACCGG AAAGCAGCAT GGCGCGTGCG
GCAGATGTGC ATCTGTGTGT TAAAGTGCCC AAAGAAGCGT GTCCGTTAGG ACTGGCGCCT
ACCAGTAGTA CCACCGCAAC GCTGGTGATG GGCGACGCGC TCGCTGTGGC GTTGTTAAAA
GCGCGCGGCT TTACCGCCGA GGATTTCGCT CTGTCGCATC CTGGCGGCGC GCTGGGACGT
AAGCTACTGC TGCGCGTAAG CGATATTATG CATACTGGCG ATGAGATCCC GCATGTTAAT
AAACATGCCA CCCTGCGTGA TGCGCTGTTA GAAATTACGC GTAAAAATCT CGGTATGACC
GTCATTTGCG ATGAATCCAT GAAGATCGAC GGTATCTTCA CCGACGGCGA TTTACGTCGC
GTATTCGATA TGGGCGGCGA TATGCGCCAG TTGGGGATCG CCGAGGTGAT GACGCCAGGG
GGCATTCGCG TGCGTCCCGG TATTCTCGCT GTCGATGCGC TGAATTTAAT GCAGTCCCGC
CATATCACCT CCGTACTGGT TGCTGATGGC GACCAGTTAC TCGGTGTGTT ACATATGCAT
GATCTCCTGC GTGCAGGCGT CGTGTAG
|
|---|
| Protein sequence | MSHLALQPGF DFQQAGKEVL EIEREGLAEL DQYINQHFTL ACEKMFNCTG KVVVMGMGKS
GHIGRKMAAT FASTGTSSFF VHPGEAAHGD LGMVTPQDVV IAISNSGESS EIAALIPVLK
RLHVPLICIT GRPESSMARA ADVHLCVKVP KEACPLGLAP TSSTTATLVM GDALAVALLK
ARGFTAEDFA LSHPGGALGR KLLLRVSDIM HTGDEIPHVN KHATLRDALL EITRKNLGMT
VICDESMKID GIFTDGDLRR VFDMGGDMRQ LGIAEVMTPG GIRVRPGILA VDALNLMQSR
HITSVLVADG DQLLGVLHMH DLLRAGVV
|
|---|
| |