| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3566 |
|---|
| Symbol | ispB |
|---|
| ID | 6482658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3455265 |
|---|
| End bp | 3456377 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642738846 |
|---|
| Product | octaprenyl diphosphate synthase |
|---|
| Protein accession | YP_002042563 |
|---|
| Protein GI | 194443184 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000499434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AAAACACAAC GCATACGGTA ACGTTTATCT GCGGCGTTTT TTCAGTACAA
TCAGGGTATA TTTCTAACCA TAAACCCTAC GTTACCTCAT TCAGACATGG GATAATCGGG
GCGATAAGCC CGGCTTTTGC GATGAATTTA GAAAAAATCA ACGAGTTAAC CGCGCAAGAT
ATGGCGGGTG TCAATGCGAC AATCCTTGAA CAGCTTAATT CCGACGTTCA ACTGATTAAT
CAGCTAGGAT ATTACATTAT TAGCGGCGGC GGAAAACGCA TTCGTCCGAT GATTGCCGTT
CTTGCCGCGC GCGCGGTGGG TTATCAGGGT AACGCGCACG TGACTATCGC CGCTCTGATC
GAGTTTATCC ACACGGCGAC GCTGCTACAT GATGATGTGG TGGATGAATC CGATATGCGT
CGCGGCAAAG CGACGGCAAA TGCCGCTTTC GGTAATGCCG CCAGCGTGTT GGTCGGCGAC
TTTATCTATA CCCGCGCCTT CCAGATGATG ACCAGCCTCG GCTCGTTAAA AGTGCTGGAA
GTGATGTCGG AAGCGGTCAA CGTGATTGCA GAAGGCGAAG TGCTGCAATT GATGAACGTG
AATGACCCGG ACATTACCGA AGAAAATTAC ATGCGGGTGA TTTACAGTAA AACGGCCCGT
CTGTTCGAAG CTGCCGCCCA GTGCTCCGGT ATTCTCGCTG GTTGTACGCC TGAGCAAGAG
AAAGGGTTGC AGGACTATGG TCGCTACCTT GGTACGGCTT TCCAGCTCAT TGACGATCTG
CTGGATTACA GTGCCGACGG CGAGCATCTC GGTAAAAATG TGGGTGATGA CCTCAATGAG
GGCAAACCTA CCTTACCGTT GCTTCACGCC ATGCGCCACG GTACGCCAGA ACAGTCAGCG
ATGATCCGTA CCGCTATTGA ACAAGGTAAT GGCCGTCATC TTCTGGAACC GGTTCTGGAA
GCGATGACCA CCTGCGGCTC GCTGGAATGG ACGCGTCAGC GAGCGGAAGA AGAAGCCGAC
AAAGCGATAT CCGCGTTGCA GATATTGCCG GATACCCCAT GGCGTGAGGC GCTAATCGGT
CTCGCACACA TCGCGGTGCA GCGCGATCGT TAA
|
|---|
| Protein sequence | MKKKNTTHTV TFICGVFSVQ SGYISNHKPY VTSFRHGIIG AISPAFAMNL EKINELTAQD
MAGVNATILE QLNSDVQLIN QLGYYIISGG GKRIRPMIAV LAARAVGYQG NAHVTIAALI
EFIHTATLLH DDVVDESDMR RGKATANAAF GNAASVLVGD FIYTRAFQMM TSLGSLKVLE
VMSEAVNVIA EGEVLQLMNV NDPDITEENY MRVIYSKTAR LFEAAAQCSG ILAGCTPEQE
KGLQDYGRYL GTAFQLIDDL LDYSADGEHL GKNVGDDLNE GKPTLPLLHA MRHGTPEQSA
MIRTAIEQGN GRHLLEPVLE AMTTCGSLEW TRQRAEEEAD KAISALQILP DTPWREALIG
LAHIAVQRDR
|
|---|
| |