| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3536 |
|---|
| Symbol | deaD |
|---|
| ID | 6485917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3428245 |
|---|
| End bp | 3430134 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642738819 |
|---|
| Product | ATP-dependent RNA helicase DeaD |
|---|
| Protein accession | YP_002042538 |
|---|
| Protein GI | 194446047 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 114 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAT TCGAAACCAC TTTTGCAGAT CTGGGGCTGA AGGCTCCTAT CCTTGAAGCC
CTTACCGATC TGGGTTACGA AAAACCATCT CCAATCCAGG CAGAGTGCAT TCCGCATCTG
CTGGGCGGTC GCGACGTGCT GGGCATGGCC CAGACCGGTA GCGGCAAAAC CGCAGCGTTC
TCTTTACCGC TGCTCAACAA TCTTGATCCT GAGCTGAAGG CACCTCAGAT TCTGGTGCTG
GCGCCAACCC GCGAACTGGC GGTACAGGTT GCCGAAGCCA TGACGGATTT CTCTAAACAC
ATGCGCGGCG TAAACGTGGT TGCCCTGTAC GGCGGTCAGC GTTATGACGT GCAGTTACGC
GCCCTGCGTC AGGGGCCGCA GATCGTTGTC GGTACGCCGG GACGTCTGCT TGATCACTTA
AAACGCGGCA CCCTCGACCT CTCTAAACTG AGTGGTCTGG TGCTGGATGA AGCCGACGAA
ATGCTGCGTA TGGGCTTCAT CGAAGACGTT GAAACTATTA TGGCGCAGAT CCCGGAAGGT
CATCAGACCG CTCTGTTCTC CGCCACCATG CCGGAAGCGA TTCGTCGCAT TACCCGCCGC
TTTATGAAAG AGCCGCAGGA AGTGCGCATT CAGTCCAGCG TGACTACCCG TCCTGACATC
AGCCAGAGCT ACTGGACTGT CTGGGGTATG CGTAAAAACG AAGCGCTGGT GCGTTTCCTG
GAAGCGGAAG ACTTTGATGC GGCGATTATC TTCGTACGTA CCAAAAACGC GACCCTGGAA
GTAGCAGAAG CGCTGGAACG TAGCGGCTAC AACAGCGCCG CGTTGAATGG CGATATGAAC
CAGGCGCTGC GTGAGCAGAC TCTGGAACGC CTGAAAGATG GTCGTCTGGA CATCCTGATC
GCCACCGATG TTGCGGCACG TGGTCTGGAC GTTGAACGTA TCAGCCTGGT GGTGAACTAC
GATATCCCGA TGGACTCCGA GTCCTACGTT CACCGTATCG GTCGTACCGG TCGTGCGGGT
CGCGCCGGTC GCGCGCTGCT GTTCGTTGAG AACCGCGAGC GTCGTCTGCT GCGCAACATC
GAACGCACCA TGAAGCTGAC CATTCCGGAA GTGGAACTGC CGAACGCAGA ACTGCTGGGT
AAACGCCGTC TGGAAAAATT CGCCGCGAAA GTTCAGCAGC AACTGGAAAG CAGCGATCTG
GATCAGTACC GTGCGCTGCT GGCGAAAATC CAGCCGTCTG CTGAAGGCGA AGAGCTGGAT
CTCGAAACGC TGGCCGCCGC ACTGCTGAAA ATGGCGCAGG GCGAGCGTCC GCTGATTCTG
CCGCCGGATG CGCCGATGCG TCCCAAGCGT GAATTCCGTG ACCGTGACGA CCGTGGTCCG
CGCGATCGTA ACGACCGTGG CCCGCGTGGC GATCGTGAAG ATCGTCCGCG TCGTGAACGT
CGTGACGTTG GCGATATGCA GTTATACCGC ATTGAAGTGG GCCGTGATGA CGGCGTTGAA
GTTCGTCATA TCGTGGGCGC TATCGCTAAC GAAGGCGACA TCAGCAGCCG TTACATTGGT
AACATTAAGC TGTTCGCGTC TCACTCCACC ATCGAGCTGC CGAAAGGTAT GCCGGGCGAA
GTGTTGCAGC ACTTCACGCG TACCCGCATT CTGAACAAGC CGATGAATAT GCAGCTGTTG
GGTGATGCTG TTCCGCACGC GGGCGGCGAA CGTCGCGGCG GTGGTCGTAG CTTCAGTGGC
GAGCGTCGTG AAGGCGGTCG TAATTTCAGC GGCGAACGTC GTGAAGGCGG TCGTGGTGAT
GGTCGTCGCT TCAGCGGCGA ACGTCGTGAA AGCCGTGGTC CGCGTCGTGA TGACTCTACC
GGTCGCCGTC GTTTCGGCGG TGATGCGTAA
|
|---|
| Protein sequence | MAEFETTFAD LGLKAPILEA LTDLGYEKPS PIQAECIPHL LGGRDVLGMA QTGSGKTAAF
SLPLLNNLDP ELKAPQILVL APTRELAVQV AEAMTDFSKH MRGVNVVALY GGQRYDVQLR
ALRQGPQIVV GTPGRLLDHL KRGTLDLSKL SGLVLDEADE MLRMGFIEDV ETIMAQIPEG
HQTALFSATM PEAIRRITRR FMKEPQEVRI QSSVTTRPDI SQSYWTVWGM RKNEALVRFL
EAEDFDAAII FVRTKNATLE VAEALERSGY NSAALNGDMN QALREQTLER LKDGRLDILI
ATDVAARGLD VERISLVVNY DIPMDSESYV HRIGRTGRAG RAGRALLFVE NRERRLLRNI
ERTMKLTIPE VELPNAELLG KRRLEKFAAK VQQQLESSDL DQYRALLAKI QPSAEGEELD
LETLAAALLK MAQGERPLIL PPDAPMRPKR EFRDRDDRGP RDRNDRGPRG DREDRPRRER
RDVGDMQLYR IEVGRDDGVE VRHIVGAIAN EGDISSRYIG NIKLFASHST IELPKGMPGE
VLQHFTRTRI LNKPMNMQLL GDAVPHAGGE RRGGGRSFSG ERREGGRNFS GERREGGRGD
GRRFSGERRE SRGPRRDDST GRRRFGGDA
|
|---|
| |