Gene SNSL254_A3516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3516 
Symbol 
ID6482159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3411531 
End bp3411995 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content54% 
IMG OID642738799 
ProductPTS system galactitol-specific transporter subunit IIA 
Protein accessionYP_002042518 
Protein GI194444989 
COG category[G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0319619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones80 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAC TATTTGTCCG AACCGGAATC ACATTCGACT CGAGCCAACA GGCGCTGGCG 
CACATTGGCA AAGAGATGCT GGCGAAAGGC GTGGTACATG ATAGTTATCC GCAGGCGCTG
GTGGAACGTG AAGCGTCTTT TCCTACCGGC ATTGCGCTGG AGCGTCACGC CGTCGCTATC
CCTCATTGCG AGGCGGTTCA TGCGAAATCA CCCGCTATCT ATCTGATTCG TCCAGATAAG
CCGGTCATGT TTCAACAGGC GGATGATGAC GAAGAGATTG CCGTTTCGTT AATCATCGCC
TTAATCGTTG AAAACCCGGC GGCACAGCTA AAACTTCTGC GCCGCCTGTT TAGTGAGCTA
CAGAACCCGA GCACCCTCGA TGCCCTGTTA AGCGCGCCGG ATGCCGAACT GGCGATACGC
TTTCAGGAAA CCATCCTTGA GCCTGAGCAG TGCGTCCAGG TTTGA
 
Protein sequence
MSQLFVRTGI TFDSSQQALA HIGKEMLAKG VVHDSYPQAL VEREASFPTG IALERHAVAI 
PHCEAVHAKS PAIYLIRPDK PVMFQQADDD EEIAVSLIIA LIVENPAAQL KLLRRLFSEL
QNPSTLDALL SAPDAELAIR FQETILEPEQ CVQV