Gene SNSL254_A3487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3487 
Symbol 
ID6485625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3384521 
End bp3385183 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content52% 
IMG OID642738774 
Productinner membrane protein YqjA 
Protein accessionYP_002042493 
Protein GI194445025 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones79 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTAC TGACTCAATT GCTGAATGCC CTGTGGGCTC AGGACTTTGA AACACTGGCC 
AATCCTTCCA TGATTGGCAT GTTATATTTT GTGTTATTTA TGATTTTGTT TCTGGAAAAT
GGGCTGCTCC CTGCCGCCTT TTTGCCTGGC GACAGCCTGT TGATCCTGGT CGGCGTGCTG
ATCGCCAAAG GCGCGATGGG TTTTCCACAA ACCATTTTGC TGCTTACCGT CGCGGCCAGC
CTGGGTTGCT GGGTGAGCTA TATTCAGGGC CGCTGGCTGG GGAATACCCG CACCGTGCAA
AACTGGCTCT CTCATCTCCC CGCACATTAT CATCAACGCG CCCATCACCT TTTCCATAAG
CACGGCCTGT CGGCATTATT GATAGGCCGT TTTATCGCGT TTGTCAGAAC GCTGCTGCCC
ACCATTGCCG GCATATCCGG CCTGAATAAC GCGCGCTTTC AGTTCTTCAA CTGGATGAGC
GGCTTGTTGT GGGTGCTTAT CCTGACGTCG CTGGGCTATC TGCTGGGCAA AACGCCCGTC
TTTATGAAGT ATGAAGATCA GTTAATGTCA TGCCTGATGC TGCTGCCCGT GGTGCTGCTC
TTTTTTGGCC TGGCGGGTTC ACTGGTCATG CTGTGGAAAA AGAAGTATGG GAGCCGGGGA
TAA
 
Protein sequence
MELLTQLLNA LWAQDFETLA NPSMIGMLYF VLFMILFLEN GLLPAAFLPG DSLLILVGVL 
IAKGAMGFPQ TILLLTVAAS LGCWVSYIQG RWLGNTRTVQ NWLSHLPAHY HQRAHHLFHK
HGLSALLIGR FIAFVRTLLP TIAGISGLNN ARFQFFNWMS GLLWVLILTS LGYLLGKTPV
FMKYEDQLMS CLMLLPVVLL FFGLAGSLVM LWKKKYGSRG