Gene SNSL254_A3471 details

Gene Information

• Locus tag: SNSL254_A3471
• Symbol: rpoD
• ID: 6486865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_011080
• Strand: +
• Start bp: 3365730
• End bp: 3367577
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 642738758
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002042478
• Protein GI: 194445988
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 88
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAGCAAA ACCCGCAGTC ACAGCTGAAA CTTCTTGTCA CCCGTGGTAA GGAGCAAGGC 
TATCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCGTCGA TTCAGATCAA 
ATTGAAGATA TCATCCAAAT GATCAACGAC ATGGGTATTC AGGTAATGGA AGAAGCGCCT 
GATGCCGATG ATCTGCTGCT GGCTGAAAAT ACCACCAGCA CCGATGAAGA TGCGGAAGAA 
GCTGCTGCAC AAGTTCTGTC CAGTGTTGAG TCTGAAATCG GTCGTACGAC TGACCCGGTA 
CGCATGTATA TGCGTGAAAT GGGCACTGTT GAACTGTTGA CCCGGGAAGG CGAAATCGAC 
ATCGCTAAAC GTATCGAAGA CGGGATCAAC CAGGTTCAAT GCTCCGTTGC CGAATACCCG 
GAAGCCATTA CCTATCTGCT GGAACAGTAC GATCGCGTTG AGGCTGAAGA GGCTCGTTTG 
TCCGATCTTA TCACCGGCTT TGTCGATCCG AACGCGGAAG AAGAGATGGC GCCGACCGCA 
ACTCACGTCG GTTCTGAACT CTCCCAGGAA GACCTGGATG ATGACGAAGA CGAAGATGAA 
GAAGACGGCG ACGATGACGC CGCCGATGAC GACAACAGCA TTGACCCTGA ACTGGCACGC 
GAAAAATTCG CTGAACTGCG CGCGCAATAC GTCGTTACGC GCGACACCAT CAAAGCGAAA 
GGCCGCAGCC ATGCTGCCGC GCAGGAAGAG ATTCTGAAGC TGTCTGAAGT GTTCAAACAG 
TTCCGTCTGG TACCGAAGCA ATTCGACTAT CTGGTCAACA GTATGCGCGT GATGATGGAT 
CGCGTGCGTA CCCAGGAACG TCTGATCATG AAGCTCTGCG TCGAGCAGTG CAAAATGCCG 
AAGAAGAACT TTATCACGCT GTTTACCGGT AATGAAACCA GCGAAACCTG GTTCAATGCC 
GCTATCGCGA TGAACAAACC GTGGTCGGAA AAACTGCACG ATGTCGCGGA AGAAGTGCAA 
CGCTGCCTGC AAAAACTGCG GCAGATTGAA GAAGAGACCG GTCTGACCAT CGAACAGGTG 
AAAGACATCA ACCGTCGCAT GTCCATCGGG GAAGCGAAAG CCCGCCGTGC GAAGAAAGAG 
ATGGTTGAAG CGAACTTGCG TCTGGTTATT TCTATCGCTA AGAAATACAC CAACCGTGGC 
TTGCAATTCC TTGATCTGAT TCAGGAAGGC AACATCGGTC TGATGAAAGC GGTAGATAAG 
TTCGAATACC GTCGCGGCTA CAAATTCTCC ACCTATGCAA CCTGGTGGAT CCGTCAGGCG 
ATCACCCGTT CTATCGCCGA TCAGGCGCGC ACCATCCGTA TTCCGGTGCA TATGATTGAG 
ACCATCAACA AGCTCAACCG TATTTCTCGC CAGATGCTGC AAGAGATGGG CCGCGAGCCA 
ACGCCGGAAG AGCTGGCTGA ACGGATGCTG ATGCCGGAAG ATAAAATTCG TAAGGTGCTG 
AAGATTGCCA AAGAGCCAAT CTCCATGGAA ACGCCGATCG GCGACGATGA AGATTCGCAT 
CTGGGTGATT TCATCGAGGA TACCACCCTC GAGCTGCCGC TGGACTCTGC CACTACCGAG 
AGCCTGCGTG CCGCCACTCA CGACGTTTTG GCTGGCCTGA CCGCTCGTGA AGCGAAAGTG 
CTGCGTATGC GTTTCGGTAT CGATATGAAC ACCGACCACA CGCTGGAAGA AGTGGGTAAA 
CAGTTCGATG TTACCCGCGA ACGTATCCGT CAGATCGAAG CGAAGGCGCT GCGTAAACTG 
CGCCACCCGA GCCGTTCTGA AGTGCTGCGC AGCTTCCTCG ACGATTAA 

 

Protein sequence

MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIVDSDQ IEDIIQMIND MGIQVMEEAP 
DADDLLLAEN TTSTDEDAEE AAAQVLSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID 
IAKRIEDGIN QVQCSVAEYP EAITYLLEQY DRVEAEEARL SDLITGFVDP NAEEEMAPTA 
THVGSELSQE DLDDDEDEDE EDGDDDAADD DNSIDPELAR EKFAELRAQY VVTRDTIKAK 
GRSHAAAQEE ILKLSEVFKQ FRLVPKQFDY LVNSMRVMMD RVRTQERLIM KLCVEQCKMP 
KKNFITLFTG NETSETWFNA AIAMNKPWSE KLHDVAEEVQ RCLQKLRQIE EETGLTIEQV 
KDINRRMSIG EAKARRAKKE MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK 
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLNRISR QMLQEMGREP 
TPEELAERML MPEDKIRKVL KIAKEPISME TPIGDDEDSH LGDFIEDTTL ELPLDSATTE 
SLRAATHDVL AGLTAREAKV LRMRFGIDMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL 
RHPSRSEVLR SFLDD