| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3444 |
|---|
| Symbol | tolC |
|---|
| ID | 6482429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3337903 |
|---|
| End bp | 3339372 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642738733 |
|---|
| Product | outer membrane channel protein |
|---|
| Protein accession | YP_002042453 |
|---|
| Protein GI | 194446348 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.606184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TGCTCCCCAT CCTTATCGGC CTGAGCCTGT CGGGGTTCAG CACACTAAGC
CAGGCAGAGA ACCTGATGCA AGTTTATCAG CAAGCACGCC TGAGCAACCC GGAATTGCGT
AAATCCGCTG CCGATCGCGA TGCTGCATTC GAAAAAATTA ACGAAGCGCG TAGTCCTTTA
CTGCCGCAAC TGGGTTTAGG TGCCGACTAC ACCTACAGCA ACGGTTATCG CGATGCGAAC
GGTATCAACT CCAATGAAAC CAGCGCTTCC CTGCAATTAA CGCAGACGCT ATTTGATATG
TCGAAATGGC GTGGGCTCAC CCTGCAAGAA AAAGCAGCAG GCATTCAGGA TGTCACCTAT
CAGACCGATC AGCAGACGCT GATCCTCAAT ACCGCGAACG CGTATTTTAA GGTATTGAAC
GCTATTGATG TGCTTTCCTA TACCCAGGCG CAAAAAGAGG CTATCTACCG TCAGTTAGAT
CAAACGACGC AACGTTTTAA CGTGGGTCTG GTCGCCATTA CCGACGTGCA AAACGCCCGT
GCGCAATATG ATACCGTACT GGCGAATGAA GTGACCGCCC GCAACAACCT GGATAACGCG
GTAGAAGAGT TGCGCCAGGT GACCGGCAAT TATTACCCGG AGCTGGCGTC GCTTAACGTC
GAGCATTTTA AAACCGACAA ACCCAAAGCT GTTAATGCGC TGCTGAAGGA AGCGGAAAAC
CGTAACCTGT CGCTGTTGCA GGCGCGTTTA AGTCAGGATC TGGCGCGCGA GCAAATCCGT
CAGGCGCAGG ATGGTCATCT GCCGACGCTG AATTTAACGG CCTCAACCGG CATTTCTGAT
ACCTCTTATA GCGGTTCTAA AACCAACTCC GCCCAGTACG ACGATAGCAA CATGGGGCAG
AATAAAATCG GCCTGAACTT CTCCCTGCCG CTGTATCAAG GCGGGATGGT TAACTCGCAG
GTAAAACAGG CGCAGTATAA CTTCGTCGGC GCAAGCGAAC AGCTGGAAAG CGCGCACCGT
AGCGTGGTGC AGACCGTACG TTCTTCCTTT AACAATATTA ACGCCTCCAT CAGCAGCATC
AACGCGTATA AACAGGCAGT CGTTTCCGCG CAAAGTTCTT TGGATGCAAT GGAAGCCGGT
TACTCGGTCG GTACACGTAC CATTGTTGAC GTACTGGATG CCACCACCAC TCTGTATGAT
GCCAAGCAGC AACTGGCCAA CGCGCGTTAT ACCTATTTGA TTAATCAGTT AAATATCAAA
TATGCGCTCG GTACGCTGAA CGAGCAGGAT CTGCTCGCGC TTAACAGTAC GTTGGGTAAA
CCTATCCCGA CGTCGCCGGA AAGCGTAGCG CCGGAAACGC CAGAGCAGGA TGCTGCCGCA
GACGGTTATA ATGCCCATAG CGCCGCGCCG GCAGTACAGC CGACCGCCGC TCGCGCCAAC
AGCAATAATG GCAATCCATT CCGGCATTGA
|
|---|
| Protein sequence | MKKLLPILIG LSLSGFSTLS QAENLMQVYQ QARLSNPELR KSAADRDAAF EKINEARSPL
LPQLGLGADY TYSNGYRDAN GINSNETSAS LQLTQTLFDM SKWRGLTLQE KAAGIQDVTY
QTDQQTLILN TANAYFKVLN AIDVLSYTQA QKEAIYRQLD QTTQRFNVGL VAITDVQNAR
AQYDTVLANE VTARNNLDNA VEELRQVTGN YYPELASLNV EHFKTDKPKA VNALLKEAEN
RNLSLLQARL SQDLAREQIR QAQDGHLPTL NLTASTGISD TSYSGSKTNS AQYDDSNMGQ
NKIGLNFSLP LYQGGMVNSQ VKQAQYNFVG ASEQLESAHR SVVQTVRSSF NNINASISSI
NAYKQAVVSA QSSLDAMEAG YSVGTRTIVD VLDATTTLYD AKQQLANARY TYLINQLNIK
YALGTLNEQD LLALNSTLGK PIPTSPESVA PETPEQDAAA DGYNAHSAAP AVQPTAARAN
SNNGNPFRH
|
|---|
| |