Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3427 |
Symbol | |
ID | 6482320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3322445 |
End bp | 3323752 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642738716 |
Product | hypothetical protein |
Protein accession | YP_002042436 |
Protein GI | 194444210 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 87 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTTG AATATATTTA CCCAATAATT GTTTTATTTG GCAGCTTTGC CATTATGCTG GCGGTCGGCG TTCCTATTAC ATTCGCTATC GGGCTGTCAT CCTTATTCTC AATCCTGATA GCCCTTCCCC CGGATGCCGC AATCTCGGTT ATTTCGCAAA AAATGACCGT CGGTCTTGAT GGCTTTACGC TGCTGGCGAT CCCCTTTTTT GTGTTAGCCG GCAATATCAT GAATACCGGG GGAATCGCCC GGCGCCTGGT GAATCTGGCT CAGGCGTTAG TTGGCCGCCT TCCCGGTTCG CTGGCGCACT GCAATATTCT GGCGAACACC CTGTTTGGCG CGATATCCGG CTCGGCTGTC GCTTCTGCGG CCGCGGTGGG CGGCATCATG TCGCCATTAC AGGAAAAAGA AGGCTACTCT CCGGCGTTCT CTACGGCGAT CAACGTCGCT TCGGCGCCGA TTGGCTTGAT GATCCCGCCC AGCAATGTGC TAATTGTCTA TTCGCTGGCT AGCGGCGGCA CCTCTGTCGC CGCCCTGTTT TTGGCGGGCT ACCTGCCCGG CATCTTAACC GCGCTGGCTT TAATGACGGT AGCGGCGCTG TATGCCCATC GCCACCATTA CCCGGTTGCC GAACGCATCA ACCTGCGGCA GTTTCTGTCG GTATTCCGCG ATTCGTTGCC CAGCCTGTTG CTGATATTTA TTATTATCGG CGGCATTATC GGCGGCGTAT TTACGCCAAC AGAGGCCTCT GCGATCGCAG TAATCTATAG CCTGGCGCTG GCGGCCATTT ATCGAGAAAT TAATGTGAGT AAGTTGCGCG ATATTCTGCT GGATTCGGTA GTAACCAGCT CTATTGTTCT CTTACTGGTC GGCTGCTCAA TGGGAATGTC ATGGGCGATG ACCAATGCTG ATGTTCCTGA ACTGATTAAT GAAATGATTA CCAGCGTGTC CGAAAATAAA TGGGTCATCT TGCTGATTAT CAATCTCATT TTGTTACTCG TCGGGACATT TATGGATATT ACCCCGGCTA TTCTAATCTT TACGCCTATT TTCCTTCCCA TTGCTCAACA TCTGGGAATC GACCCTGTCC ATTTTGGCAT TATTATGGTT TTCAATTTAA CCATCGGACT GTGTACGCCC CCGGTAGGCA CTATTTTGTT CGTCGGTTGC AGTATCGGCA AAATCAGTAT TGATAAAGTC GTCAAACCGC TATTACCGAT GTTTCTGGCA CTCTTTGTGG TCATGGCGAT GATTTGCTAC TTCCCGCAGT TGAGTCTGCT GCTTCCCACG CTGTTTGCTC CTTCCTGA
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Protein sequence | MDFEYIYPII VLFGSFAIML AVGVPITFAI GLSSLFSILI ALPPDAAISV ISQKMTVGLD GFTLLAIPFF VLAGNIMNTG GIARRLVNLA QALVGRLPGS LAHCNILANT LFGAISGSAV ASAAAVGGIM SPLQEKEGYS PAFSTAINVA SAPIGLMIPP SNVLIVYSLA SGGTSVAALF LAGYLPGILT ALALMTVAAL YAHRHHYPVA ERINLRQFLS VFRDSLPSLL LIFIIIGGII GGVFTPTEAS AIAVIYSLAL AAIYREINVS KLRDILLDSV VTSSIVLLLV GCSMGMSWAM TNADVPELIN EMITSVSENK WVILLIINLI LLLVGTFMDI TPAILIFTPI FLPIAQHLGI DPVHFGIIMV FNLTIGLCTP PVGTILFVGC SIGKISIDKV VKPLLPMFLA LFVVMAMICY FPQLSLLLPT LFAPS
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