Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3347 |
Symbol | |
ID | 6484949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3250277 |
End bp | 3250981 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642738638 |
Product | alanine racemase family |
Protein accession | YP_002042359 |
Protein GI | 194445431 |
COG category | [R] General function prediction only |
COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.335784 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 0.144225 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATA TCGCGCATAA CCTGGCATAC ATCCGGGACA AAATCTCCGC CGCGGCGACG CGTTGCGGCC GCTCTTCAGA AGAAGTTACG TTGCTTGCAG TGAGTAAAAC CAAACCTGCG AGCGACATCG CAGAAGCCAT TGCCGCCGGA CAACGGGCAT TTGGTGAAAA TTATGTACAA GAGGGGGTGG AAAAAATCCG CCACTTTCAG GAAGCGAAAG TGGAAGGCCT GCACTGGCAC TTTATTGGCC CTTTACAGTC CAACAAAAGT CGGCTGGTGG CCGAGCATTT TGACTGGTGT CATACCATCG ATCGCTTGCG TATCGCCTCG CGGCTGAGCG AACAGCGTCC GGATAATCTG CCGGCGCTAA ATGTTCTGAT CCAAATTAAT ATCAGCGATG AAAACAGCAA ATCAGGCATT CCGCTGGCGG AACTGGATGA GCTGGCCGCT GCGGTGGCTA CACTGCCGCG TCTGCGGCTT CGCGGACTGA TGGCGATCCC GGCTCCAGAG TCAGATTATG TAAGGCAGTT TGAAGTCGCA CGTCAAATGG CTGTAGCATT TGCCGGGCTG AAAGCGCGCT ACCCTGACGT TGATACCTTA TCTCTGGGTA TGAGCGACGA TATGGAAGCC GCGATTGCGG CAGGTAGCAC AATGGTGCGC ATCGGCACCG CTATCTTTGG TGCTCGTGAT TACACAAAAA ATTAA
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Protein sequence | MNDIAHNLAY IRDKISAAAT RCGRSSEEVT LLAVSKTKPA SDIAEAIAAG QRAFGENYVQ EGVEKIRHFQ EAKVEGLHWH FIGPLQSNKS RLVAEHFDWC HTIDRLRIAS RLSEQRPDNL PALNVLIQIN ISDENSKSGI PLAELDELAA AVATLPRLRL RGLMAIPAPE SDYVRQFEVA RQMAVAFAGL KARYPDVDTL SLGMSDDMEA AIAAGSTMVR IGTAIFGARD YTKN
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