| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3261 |
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| Symbol | |
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| ID | 6484172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3172758 |
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| End bp | 3175247 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642738558 |
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| Product | fimbrial usher protein |
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| Protein accession | YP_002042280 |
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| Protein GI | 194442248 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 0.313341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA CCCGGCTTGC CATTCTGATT ACCCTGACAT TTTCCGTCCT GAAGTCGCAG
GCCACGGAGT TCAATGCCAG CCTGCTGGAC AGCGGGAACC TGTCTAACGT GGACCTCACG
GCCTTCAGCC GCGAGGGGTA TGTGGCGCCC GGTAACTATA TTCTCGATAT CTGGCTCAAT
GACCAGCCGG TACGGGAACA GTATCCGGTC AGGGTTGTAC CGGTTGCCGG ACTCGACGCG
GCCGTCATCT GTGTGACAAC AGACATGGTG GCCATGCTGG GTCTTAAGGA TAAGATTATT
CATGGCCTGA AACCCGTTAC CGGTATCCCG GACGGGCAAT GCCTTGAGCT GCGCTCCGCT
GACAGTCAGG TACGGTACAG CGCTGAAAAT CAGCGTCTGA CCTTCATTAT TCCCCAGGCC
TGGATGCGTT ATCAGGACCC GGACTGGGTG CCCCCTTCAC GCTGGAGCGA CGGCGTCACC
GCCGGCCTGC TTGATTACAG CCTGATGGTC AACCGCTATA TGCCGCAGCA GGGGGAAACC
TCTACCAGCT ACAGCCTCTA CGGCACCGCC GGGGTTAATC TCGGCGCCTG GCGATTGCGG
AGCGATTACC AGTACAGCCG TTTTGACAGT GGGCAGGGTG CATCACAGTC CGATTTTTAT
CTGCCGCAGA CGTATCTGTT CCGTGCCTTG CCAGCACTGC GCTCAAAACT GACGCTCGGA
CAGACGTACC TCAGCTCCGC TATTTTTGAC TCCTTCCGCT TTGCCGGGCT CACTTTGGCC
AGCGATGAGC GCATGCTGCC GCCCTCTCTT CAGGGGTATG CCCCGAAAAT TAGCGGCATT
GCGAACAGTA ATGCACAGGT CACCGTCAGC CAGAATGGTC GCATTCTGTA CCAGACCCGG
GTGTCGCCGG GGCCTTTTGA GCTTCCCGAC CTGAGCCAGA ATATCAGCGG CAACCTGGAT
GTCAGCGTCC GGGAAAGCGA CGGTAGCGTC CGGACCTGGC AGGTCAACAC GGCCAGCGTC
CCCTTTATGG CACGCCAGGG ACAGGTTCGC TATAAGGTGG CCGCCGGACG TCCGCTGTAC
GGCGGGACGC ATAACAACAG CACGGTCAGC CCTGACTTTC TGCTCGGGGA GGCCACCTGG
GGAGCATTTA ACAACACGTC GCTGTATGGC GGCCTCATTG CCTCCACCGG CGACTACCAG
TCCGCGGCGC TCGGGATCGG CCAGAATATG GGGCTGTTGG GCGCTCTGTC TGCGGACGTC
ACCCGCTCAG ATGCGCGGTT GCCGCATGGG CAGAAGCAGT CCGGTTACAG CTACCGTATC
AACTATGCCA AAACGTTTGA TAAAACCGGC AGTACCCTGG CGTTCGTCGG ATACCGCTTC
TCGGACCGCC ATTTTCTGTC CATGCCGGAG TACCTGCAGC GTCGGACCAC TGACGGCGGC
GATGCATGGC ATGAAAAACA GAGCTACACC GTGACTTATA GCCAGTCCGT TCCGGTACTC
AACATGAGCG CGGCCCTCTC GGTAAGCCGG CTCAATTACT GGAACGCACA GTCCAACAAT
AACTACATGC TCAGCCTCAA CAAGGTGTTC AGTCTCGGCG ACCTTCAGGG ACTCTCGGCC
TCGGTGTCGT TTGCCCGTAA CCAGTACACC GGCGGGGGTA GCCAGAACCA GGTCTACGCC
ACCATCAGTA TCCCGTGGGG AGACAGTCGC CAGGTGAGTT ACAGCGTACA GAAAGATAAC
CGGGGCGGCC TGCAGCAGAC CGTGAATTAC AGCGATTTCC ATAACCCGGA CACTACATGG
AACATCAGCG CCGGTCATAA CCGTTATGAC ACCGGCAGCA ACAGCAGCTT CAGCGGCAGC
GTGCAGAGCC GTCTGCCGTG GGGCCAGGCG GCAGCGGACG CCACCCTGCA GCCCGGACAG
TACCGCAGCC TGGGCCTGAG CTGGTACGGC TCGGTGACTG CCACCGCCCA CGGTGCCGCT
TTCAGCCAGT CGATGGCCGG GAATGAGCCC CGCATGATGA TAGATACCGG AGACGTGGCC
GGTGTGCCGG TGAACGGCAA CAGCGGGGTG ACCAACCGCT TCGGGGTGGG CGTGGTGAGC
GCCGGCAGCA GCTATCGCCG CAGCGATATT TCGGTTGATG TGGCCGCCCT GCCGGAGGAC
GTGGACGTCA GCAGCTCCGT CATCAGTCAG GTACTGACGG AGGGCGCGGT GGGCTACCGG
AAGATTGACG CCAGCCAGGG GGAGCAGGTG CTCGGTCATA TCCGGCTGGC TGATGGCGCA
AGTCCGCCGT TTGGCGCCCT GGTGGTGTCC GGGAAAACCG GCAGAACCGC GGGGATGGTC
GGAGATGGCG GTCTGGCCTA CCTGACAGGT CTCAGCGGGG AAGACCGCCG GACCCTGAAT
GTGTCCTGGG ATGGCCGGGT GCAGTGCAGA CTCACCCTGC CGGAAACGGT GACACTCAGC
CGGGGGCCGC TGTTACTGCC CTGCAGATAA
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| Protein sequence | MKITRLAILI TLTFSVLKSQ ATEFNASLLD SGNLSNVDLT AFSREGYVAP GNYILDIWLN
DQPVREQYPV RVVPVAGLDA AVICVTTDMV AMLGLKDKII HGLKPVTGIP DGQCLELRSA
DSQVRYSAEN QRLTFIIPQA WMRYQDPDWV PPSRWSDGVT AGLLDYSLMV NRYMPQQGET
STSYSLYGTA GVNLGAWRLR SDYQYSRFDS GQGASQSDFY LPQTYLFRAL PALRSKLTLG
QTYLSSAIFD SFRFAGLTLA SDERMLPPSL QGYAPKISGI ANSNAQVTVS QNGRILYQTR
VSPGPFELPD LSQNISGNLD VSVRESDGSV RTWQVNTASV PFMARQGQVR YKVAAGRPLY
GGTHNNSTVS PDFLLGEATW GAFNNTSLYG GLIASTGDYQ SAALGIGQNM GLLGALSADV
TRSDARLPHG QKQSGYSYRI NYAKTFDKTG STLAFVGYRF SDRHFLSMPE YLQRRTTDGG
DAWHEKQSYT VTYSQSVPVL NMSAALSVSR LNYWNAQSNN NYMLSLNKVF SLGDLQGLSA
SVSFARNQYT GGGSQNQVYA TISIPWGDSR QVSYSVQKDN RGGLQQTVNY SDFHNPDTTW
NISAGHNRYD TGSNSSFSGS VQSRLPWGQA AADATLQPGQ YRSLGLSWYG SVTATAHGAA
FSQSMAGNEP RMMIDTGDVA GVPVNGNSGV TNRFGVGVVS AGSSYRRSDI SVDVAALPED
VDVSSSVISQ VLTEGAVGYR KIDASQGEQV LGHIRLADGA SPPFGALVVS GKTGRTAGMV
GDGGLAYLTG LSGEDRRTLN VSWDGRVQCR LTLPETVTLS RGPLLLPCR
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