Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3192 |
Symbol | |
ID | 6483310 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3103181 |
End bp | 3104545 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642738495 |
Product | lysine decarboxylase family protein |
Protein accession | YP_002042219 |
Protein GI | 194445762 |
COG category | [R] General function prediction only |
COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.334996 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 78 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATTACAC ATATTAGCCC GCTTGGCTCA ATGGATATGT TGTCGCAACT GGAAGTGGAC ATGCTGAAAC GCACGGCCAG TAGCGACCTG TATCAACTGT TTCGTAACTG TTCACTTGCC GTTCTTAACT CCGGCAGCCT GACCGACAAC AGCAAAGAGC TGCTGTCCCG CTTTGAAAAT TTCGATATTA ACGTACTGCG CCGCGAGCGC GGCGTGAAGC TGGAATTGAT TAATCCGCCT GAAGACGCCT TTGTTGACGG GCGGATTATT CGTGCGCTAC AGGCTAACCT GTTCGCGGTG CTGCGCGACA TTCTCTTTGT GAATGGACAG ATCCACAATG CTGGTCGTTT CCAGCATCTG GATCTTGAAA GCTCAACACA TATCACCAAT CTGGTGTTCT CCATTTTGCG CAACGCCCGG GCGCTGCACG TCGGCGAAGC GCCAAACATG GTGGTATGCT GGGGCGGCCA CTCAATTAAC GAAAACGAGT ACCTGTATGC CCGTCGCGTC GGCACGCAGT TGGGATTACG CGAGCTGAAC ATCTGCACCG GCTGTGGCCC TGGGGCGATG GAAGCCCCCA TGAAGGGCGC GGCGGTCGGT CACGCGCAAC AGCGTTATAA AGACAGCCGC TTTATCGGCA TGACTGAACC TTCCATTATT GCGGCTGAAC CGCCTAACCC GCTGGTGAAT GAACTGATCA TCATGCCGGA TATCGAAAAA CGCCTGGAAG CGTTCGTCCG TATCGCACAC GGTATCATCA TCTTCCCGGG CGGCGTGGGT ACGGCGGAAG AGCTGCTTTA TTTGCTGGGG ATTCTGATGA ATCCAGCCAA TAAAAATCAG GTGCTGCCGC TGATCCTGAC CGGACCAAAA GAGAGCGCCG ATTACTTCCG CGTGCTGGAT GAGTTTATTA CCCATACGCT GGGCGAAGCG GCCCGCCGTC ATTACCGCAT CATCATTGAC GATGCGGCGG AGGTAGCGCG GCTGATGAAG AAAGCGATGC CGCAAGTGAA AGAGAATCGC CGCGATACCG GCGACGCCTA TAGTTTTAAC TGGTCGATGC GTATTGCACC GGATCTGCAG GTGCCGTTTG AGCCGTCGCA TGAGAATATG GCCAACCTGA AACTGTACCC GGATCAGCCG GTTGAGATTC TGGCGGCGGA TCTGCGGCGC GCCTTCTCCG GTATTGTCGC GGGGAACGTG AAGGAGGTCG GGATACGCGC CATTGAAGCT AATGGTCCGT ATAAAATCCA CGGCGATCGA GAGATGATGC GTCGCATGGA CGATCTGCTG CAGGGATTCG TCGCGCAGCA TCGTATGAAA TTGCCGGGTT CCGCCTACAT CCCCTGTTAC GAGATCTGCG CTTAA
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Protein sequence | MITHISPLGS MDMLSQLEVD MLKRTASSDL YQLFRNCSLA VLNSGSLTDN SKELLSRFEN FDINVLRRER GVKLELINPP EDAFVDGRII RALQANLFAV LRDILFVNGQ IHNAGRFQHL DLESSTHITN LVFSILRNAR ALHVGEAPNM VVCWGGHSIN ENEYLYARRV GTQLGLRELN ICTGCGPGAM EAPMKGAAVG HAQQRYKDSR FIGMTEPSII AAEPPNPLVN ELIIMPDIEK RLEAFVRIAH GIIIFPGGVG TAEELLYLLG ILMNPANKNQ VLPLILTGPK ESADYFRVLD EFITHTLGEA ARRHYRIIID DAAEVARLMK KAMPQVKENR RDTGDAYSFN WSMRIAPDLQ VPFEPSHENM ANLKLYPDQP VEILAADLRR AFSGIVAGNV KEVGIRAIEA NGPYKIHGDR EMMRRMDDLL QGFVAQHRMK LPGSAYIPCY EICA
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