Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3187 |
Symbol | |
ID | 6485178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3099884 |
End bp | 3100666 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642738491 |
Product | tRNA pseudouridine synthase C |
Protein accession | YP_002042215 |
Protein GI | 194443144 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 0.719199 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGAGA TCCTCTATCA AGACCCGTGG CTGGTTGCCG TGAATAAACC CGCAGGCTGG CTTGTTCACC GGAGCTGGCT GGATCGCGAC GAAAAAGTCG TGGTCATGCA AACGGTGCGC GACCAAATCG GCCAGCATGT TTTTACCGCC CACCGTCTCG ACAGACCCAC GTCGGGCGTA CTGTTAATGG GGCTGTCCAG CGAAGCGGGA CGCCGTCTGG CGCAGCAGTT CGAGCAGCAC CACATCCGTA AACGCTACCA TGCCATTGTG CGCGGCTGGC TGATGGATGA CGCGGTACTG GATTATCCGC TGGTGGAAGA GCGCGATAAA ATTGCCGATA AATTCGCCCG CGAAGATAAA GCGCCCCAGC CGGCTGTAAC GCAGTATCGC GGACTGGCGA CGGTCGAAAT GGCGGTGCCG ACCGGACGTT ATCCCACCAC GCGTTATGGT CTGGTTGAGC TGGAACCAAA AACGGGACGC AAGCACCAGC TTCGTCGTCA TCTGGCGCAT CTGCGTCATC CTATCATCGG CGACAGCAAG CATGGCGATT TGCGACAAAA CCGCAGCGCC GCAGAGCATT TTGCCTGTCG TCGCCTGATG CTTCATGCCA GTCGGCTTGA ACTGACGCAC CCCTTTACCG GACAGCCGTT GATAATTCAG GCCGGGTTGG ATGAAACCTG GATGCAGGCG CTGACACAGT TTGGCTGGCG TGGACTTCTC CCTGACAATG AAAGGGTTGA GTTTACGGCG GCGTCCCGGC AGGATGAGAC TCATCAGGCA TAA
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Protein sequence | MLEILYQDPW LVAVNKPAGW LVHRSWLDRD EKVVVMQTVR DQIGQHVFTA HRLDRPTSGV LLMGLSSEAG RRLAQQFEQH HIRKRYHAIV RGWLMDDAVL DYPLVEERDK IADKFAREDK APQPAVTQYR GLATVEMAVP TGRYPTTRYG LVELEPKTGR KHQLRRHLAH LRHPIIGDSK HGDLRQNRSA AEHFACRRLM LHASRLELTH PFTGQPLIIQ AGLDETWMQA LTQFGWRGLL PDNERVEFTA ASRQDETHQA
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