| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3136 |
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| Symbol | ispD |
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| ID | 6484244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3048993 |
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| End bp | 3049703 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642738447 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_002042171 |
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| Protein GI | 194444963 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.0734118 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCCA CTTTATTGGA CGTTTGCGCC GTGGTGCCGG CGGCCGGATT TGGCCGCCGA
ATGCAAACAG AATGTCCTAA GCAGTATCTC TCAATCGGTA ATAAAACCAT TCTGGAGCAC
TCAGTTCATG CGCTGCTGGC GCATCCTCGG GTGACACGCG TTGTTATTGC TATCAGCCCT
GGCGATCATC GCTTTGCCCA ACTTCCGCTG GCGGATCATC CGCAAATCAC CGTTGTGGAT
GGCGGCAACG AACGCGCTGA TTCCGTTTTG GCCGGGTTAC AGGCCGTTGC AGAGGCGCAG
TGGGTGCTGG TGCACGACGC GGCAAGACCC TGTTTGCATC AGGATGACCT TGCGCGGTTA
CTGGCCATCA GCGAAAACAG CCGGGTCGGC GGTATTCTCG CCAGTCCGGT GCGCGACACC
ATGAAACGCG GCGAACCGGG GAAAAACGCG ATTGCCCATA CCGTAGAGCG CGCCGATTTA
TGGCACGCGC TCACCCCGCA GTTTTTCCCC CGCGAACTCT TGCACGATTG TCTGACGCGT
GCGCTGAATG AAGGCGCGAC CATCACCGAC GAGGCGTCAG CGCTGGAGTA TTGTGGTTTT
CATCCGGCGC TGGTAGAAGG TCGCGCGGAT AACATCAAGG TCACCCGTCC GGAAGATCTG
GCGCTGGCGG AATTTTATCT GACCCGAACC ATCCACCAGG AGAAAGCATA A
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| Protein sequence | MAATLLDVCA VVPAAGFGRR MQTECPKQYL SIGNKTILEH SVHALLAHPR VTRVVIAISP
GDHRFAQLPL ADHPQITVVD GGNERADSVL AGLQAVAEAQ WVLVHDAARP CLHQDDLARL
LAISENSRVG GILASPVRDT MKRGEPGKNA IAHTVERADL WHALTPQFFP RELLHDCLTR
ALNEGATITD EASALEYCGF HPALVEGRAD NIKVTRPEDL ALAEFYLTRT IHQEKA
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