Gene SNSL254_A3135 details

Gene Information

• Locus tag: SNSL254_A3135
• Symbol: ispF
• ID: 6483434
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_011080
• Strand: -
• Start bp: 3048514
• End bp: 3048993
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 642738446
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_002042170
• Protein GI: 194444240
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 56
• Fosmid unclonability p-value: 0.110632
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGAATTG GACACGGTTT TGACGTACAC GCGTTTGGCG GAGAAGGGCC GATTATTATT 
GGCGGCGTGC GTATCCCTTA TGAAAAAGGG CTATTGGCGC ATTCCGATGG CGATGTGGCG 
TTACATGCGC TGACCGATGC GCTGCTGGGC GCGGCGGCGC TTGGCGATAT CGGCAAGCTC 
TTCCCGGATA CCGATCCGGC ATTTAAGGGA GCGGATAGCC GCGAACTACT GCGTGAAGCC 
TGGCGTCGTA TTCAGGCGAA GGGGTACACC CTCGGCAACG TGGATGTCAC CATTATTGCG 
CAGGCGCCGA AAATGCTGCC GCATATTCCG CAAATGCGCG TCTTTATCGC CGAAGATCTC 
GGTTGCCATA TGGATGACGT TAACGTGAAG GCGACGACGA CGGAAAAGCT CGGATTTACC 
GGACGCGGAG AAGGCATTGC CTGCGAAGCG GTCGCGTTGC TGATGAAGGC GGCGAAATGA 

 

Protein sequence

MRIGHGFDVH AFGGEGPIII GGVRIPYEKG LLAHSDGDVA LHALTDALLG AAALGDIGKL 
FPDTDPAFKG ADSRELLREA WRRIQAKGYT LGNVDVTIIA QAPKMLPHIP QMRVFIAEDL 
GCHMDDVNVK ATTTEKLGFT GRGEGIACEA VALLMKAAK